Index
| acc | Bio.HMMData, Bio.HMMParser |
| alpha | Bio.HMMData, Bio.HMMParser |
| alphabetToSymbols | Bio.HMMParser |
| begin | Bio.HMMData, Bio.HMMParser |
| bm | Bio.HMMData, Bio.HMMParser |
| cksum | Bio.HMMData, Bio.HMMParser |
| com | Bio.HMMData, Bio.HMMParser |
| compo | Bio.HMMData, Bio.HMMParser |
| compositeMatchEmissions | Bio.HMMData, Bio.HMMParser |
| cons | Bio.HMMData, Bio.HMMParser |
| cs | Bio.HMMData, Bio.HMMParser |
| d2d | Bio.HMMData, Bio.HMMParser |
| d2m | Bio.HMMData, Bio.HMMParser |
| date | Bio.HMMData, Bio.HMMParser |
| desc | Bio.HMMData, Bio.HMMParser |
| diagramName | Bio.HMMDraw |
| drawHMMER3 | Bio.HMMDraw |
| drawSingleHMMComparison | Bio.HMMDraw |
| drawSingleHMMER3s | Bio.HMMDraw |
| effn | Bio.HMMData, Bio.HMMParser |
| ga | Bio.HMMData, Bio.HMMParser |
| getComparisonsHighlightParameters | Bio.HMMDraw |
| getHMMCompareResults | Bio.HMMCompareResult |
| getModelNames | Bio.HMMCompareResult |
| getModelsNames | Bio.HMMCompareResult |
| hmm | Bio.HMMData, Bio.HMMParser |
| HMMCompareResult | Bio.HMMCompareResult |
| HMMER3 | |
| 1 (Type/Class) | Bio.HMMData, Bio.HMMParser |
| 2 (Data Constructor) | Bio.HMMData, Bio.HMMParser |
| HMMER3Composite | |
| 1 (Type/Class) | Bio.HMMData, Bio.HMMParser |
| 2 (Data Constructor) | Bio.HMMData, Bio.HMMParser |
| HMMER3Node | |
| 1 (Type/Class) | Bio.HMMData, Bio.HMMParser |
| 2 (Data Constructor) | Bio.HMMData, Bio.HMMParser |
| i2i | Bio.HMMData, Bio.HMMParser |
| i2m | Bio.HMMData, Bio.HMMParser |
| insertEmissions | Bio.HMMData, Bio.HMMParser |
| leng | Bio.HMMData, Bio.HMMParser |
| linkscore1 | Bio.HMMCompareResult |
| linkscore2 | Bio.HMMCompareResult |
| linksequence | Bio.HMMCompareResult |
| localforward | Bio.HMMData, Bio.HMMParser |
| localmsv | Bio.HMMData, Bio.HMMParser |
| localviterbi | Bio.HMMData, Bio.HMMParser |
| m2d | Bio.HMMData, Bio.HMMParser |
| m2i | Bio.HMMData, Bio.HMMParser |
| m2m | Bio.HMMData, Bio.HMMParser |
| map | Bio.HMMData, Bio.HMMParser |
| matchEmissions | Bio.HMMData, Bio.HMMParser |
| maxl | Bio.HMMData, Bio.HMMParser |
| mm | Bio.HMMData, Bio.HMMParser |
| model1matchednodes | Bio.HMMCompareResult |
| model1Name | Bio.HMMCompareResult |
| model2matchednodes | Bio.HMMCompareResult |
| model2Name | Bio.HMMCompareResult |
| name | Bio.HMMData, Bio.HMMParser |
| nc | Bio.HMMData, Bio.HMMParser |
| ncr | Bio.HMMData, Bio.HMMParser |
| ncs | Bio.HMMData, Bio.HMMParser |
| nma | Bio.HMMData, Bio.HMMParser |
| nmv | Bio.HMMData, Bio.HMMParser |
| nodeId | Bio.HMMData, Bio.HMMParser |
| nodes | Bio.HMMData, Bio.HMMParser |
| nra | Bio.HMMData, Bio.HMMParser |
| nseq | Bio.HMMData, Bio.HMMParser |
| parseHMMCompareResult | Bio.HMMCompareResult |
| parseHMMER3 | Bio.HMMParser |
| printHMM | Bio.HMMDraw |
| readHMMCompareResult | Bio.HMMCompareResult |
| readHMMER3 | Bio.HMMParser |
| rf | Bio.HMMData, Bio.HMMParser |
| sm | Bio.HMMData, Bio.HMMParser |
| svgsize | Bio.HMMDraw |
| tc | Bio.HMMData, Bio.HMMParser |
| version | Bio.HMMData, Bio.HMMParser |