Biobase-0.1.0.1: Base library for bioinformatics

Index

.*.Biobase.Types.Ring
.+.Biobase.Types.Ring
.^.Biobase.Types.Ring
.^^.Biobase.Types.Ring
acguBiobase.RNA
acguPairsBiobase.RNA
acguStrBiobase.RNA
adjustTemperatureBiobase.Vienna.Modification.Temperature
BBiobase.Infernal.CM
BasepairBiobase.Turner
BEGLBiobase.Infernal.CM
BEGRBiobase.Infernal.CM
BIFBiobase.Infernal.CM
BranchBiobase.Infernal.CM
bulgeLBiobase.Turner.Tables
cgnsPBiobase.RNA
cguaPBiobase.RNA
char2nucBiobase.RNA
charNucListBiobase.RNA
charToNucleotideBiobase.RNA
CM 
1 (Type/Class)Biobase.Infernal.CM
2 (Data Constructor)Biobase.Infernal.CM
cmMakeLocalBiobase.Infernal.CM
cmMakeLocalBeginBiobase.Infernal.CM
cmMakeLocalEndBiobase.Infernal.CM
cmNormalizeProbabilitiesBiobase.Infernal.CM
CMProbBiobase.Infernal.CM
cmProb2ScoreBiobase.Infernal.CM
CMScoreBiobase.Infernal.CM
cmScore2ProbBiobase.Infernal.CM
CMTypeBiobase.Infernal.CM
cmTypeBiobase.Infernal.CM
colAnnotationsBiobase.Infernal.Stockholm
commentsBiobase.Structure
Complex 
1 (Type/Class)Biobase.Structure
2 (Data Constructor)Biobase.Structure
constRBiobase.Types.Convert
ConvertBiobase.Types.Convert
convertBiobase.Types.Convert
DBiobase.Infernal.CM
dangle3Biobase.Turner.Tables
dangle5Biobase.Turner.Tables
dmapBiobase.Turner.Tables
dotbracketBiobase.Structure.DotBracket
dotbracketToPairlistBiobase.Structure.DotBracket
dZipWithBiobase.Turner.Tables
EBiobase.Infernal.CM
eacguBiobase.RNA
eInfBiobase.Constants
eMaxBiobase.Constants
EmissionBiobase.Infernal.CM
EmitPBiobase.Infernal.CM
EmitSBiobase.Infernal.CM
emptyIVBiobase.Vienna
emptyTablesBiobase.Vienna
emptyVBiobase.Vienna
ENDBiobase.Infernal.CM
Energy 
1 (Type/Class)Biobase.Types.Energy
2 (Data Constructor)Biobase.Types.Energy
eNucBiobase.Infernal.CM
eNucLBiobase.Infernal.CM
eNucRBiobase.Infernal.CM
escoreBiobase.Infernal.CM
exAnnotationsBiobase.Infernal.Stockholm
expm1Biobase.Types.Partition
export 
1 (Function)Biobase.Vienna.Export.ViennaC
2 (Function)Biobase.Vienna.Export.ViennaPar
extMMBiobase.Turner.Tables
fInfBiobase.Constants
fromFile 
1 (Function)Biobase.Infernal.Stockholm.Import
2 (Function)Biobase.Infernal.CM.Import
fromStringBiobase.Infernal.CM.Import
fromTurnerBiobase.Vienna.Import.Turner
gasconstBiobase.Constants
hairpinLBiobase.Turner.Tables
hairpinLookupBiobase.Turner.Tables
hairpinMMBiobase.Turner.Tables
headerBiobase.Infernal.CM
ILBiobase.Infernal.CM
iloop1x1Biobase.Turner.Tables
iloop1x2Biobase.Turner.Tables
iloop1xnMMBiobase.Turner.Tables
iloop2x2Biobase.Turner.Tables
iloop2x3MMBiobase.Turner.Tables
iloopLBiobase.Turner.Tables
iloopMMBiobase.Turner.Tables
importParBiobase.Vienna.Import.ViennaPar
intermolecularInitBiobase.Turner.Tables
IRBiobase.Infernal.CM
isZeroBiobase.Types.Ring
Kelvin 
1 (Type/Class)Biobase.Types.Convert
2 (Data Constructor)Biobase.Types.Convert
kelvinC0Biobase.Constants
largeLoopBiobase.Turner.Tables
lenBiobase.Structure
localBeginBiobase.Infernal.CM
localBeginPossibleBiobase.Infernal.CM
localBeginProb2ScoreBiobase.Infernal.CM
localBeginScore2ProbBiobase.Infernal.CM
localEndBiobase.Infernal.CM
localEndPossibleBiobase.Infernal.CM
localEndProb2ScoreBiobase.Infernal.CM
localEndScore2ProbBiobase.Infernal.CM
log1pBiobase.Types.Partition
logSumBiobase.Types.Partition
MATLBiobase.Infernal.CM
MATPBiobase.Infernal.CM
MATRBiobase.Infernal.CM
maxNinioBiobase.Turner.Tables
mkDashesBiobase.Structure.Shapes
mkPairBiobase.Infernal.Stockholm.Import
mkPartitionBiobase.Types.Partition
MkPrimaryBiobase.RNA
mkPrimaryBiobase.RNA
MLBiobase.Infernal.CM
MPBiobase.Infernal.CM
MRBiobase.Infernal.CM
multiHelixBiobase.Turner.Tables
multiMMBiobase.Turner.Tables
multiNucBiobase.Turner.Tables
multiOffsetBiobase.Turner.Tables
nchildrenBiobase.Infernal.CM
negBiobase.Types.Ring
nidBiobase.Infernal.CM
ninioBiobase.Turner.Tables
Node 
1 (Type/Class)Biobase.Infernal.CM
2 (Data Constructor)Biobase.Infernal.CM
nodeMainStateBiobase.Infernal.CM
nodeMainStateAssocsBiobase.Infernal.CM
nodesBiobase.Infernal.CM
nodeToStringBiobase.Infernal.CM.Export
NodeTypeBiobase.Infernal.CM
nonStandardMaxBiobase.Vienna.Modification.NonStandard
nparentsBiobase.Infernal.CM
npnsPBiobase.RNA
nstatesBiobase.Infernal.CM
ntagBiobase.Infernal.CM
ntypeBiobase.Infernal.CM
nucABiobase.RNA
nucCBiobase.RNA
nucCharListBiobase.RNA
nucEBiobase.RNA
nucGBiobase.RNA
Nucleotide 
1 (Type/Class)Biobase.RNA
2 (Data Constructor)Biobase.RNA
nucleotideToCharBiobase.RNA
nucUBiobase.RNA
nullModelBiobase.Infernal.CM
oneBiobase.Types.Ring
pairingsBiobase.Structure
pairsBiobase.RNA
pairTableBiobase.RNA
parseTurnerBiobase.Turner.Import
Partition 
1 (Type/Class)Biobase.Types.Partition
2 (Data Constructor)Biobase.Types.Partition
partitionTablesBiobase.Vienna.Modification.Partition
PrimaryBiobase.RNA
prob2ScoreBiobase.Infernal.CM
RingBiobase.Types.Ring
ROOTBiobase.Infernal.CM
SBiobase.Infernal.CM
schildrenBiobase.Infernal.CM
Score 
1 (Type/Class)Biobase.Types.Score
2 (Data Constructor)Biobase.Types.Score
score2ProbBiobase.Infernal.CM
Secondary 
1 (Type/Class)Biobase.Structure
2 (Data Constructor)Biobase.Structure
semissionBiobase.Infernal.CM
sequencesBiobase.Infernal.Stockholm
sidBiobase.Infernal.CM
snodeBiobase.Infernal.CM
sparentsBiobase.Infernal.CM
SSExtBiobase.Structure
SSTree 
1 (Type/Class)Biobase.Structure
2 (Data Constructor)Biobase.Structure
stackBiobase.Turner.Tables
stagBiobase.Infernal.CM
State 
1 (Type/Class)Biobase.Infernal.CM
2 (Data Constructor)Biobase.Infernal.CM
stateProb2ScoreBiobase.Infernal.CM
statesBiobase.Infernal.CM
stateScore2ProbBiobase.Infernal.CM
statesProb2ScoreBiobase.Infernal.CM
statesScore2ProbBiobase.Infernal.CM
stateToStringBiobase.Infernal.CM.Export
StateTypeBiobase.Infernal.CM
Stockholm 
1 (Type/Class)Biobase.Infernal.Stockholm
2 (Data Constructor)Biobase.Infernal.Stockholm
stringSBiobase.Infernal.CM.Export
structuresBiobase.Structure
strVpListBiobase.RNA
stypeBiobase.Infernal.CM
tchildBiobase.Infernal.CM
Temperature 
1 (Type/Class)Biobase.Turner
2 (Type/Class)Biobase.Vienna
termAUBiobase.Turner.Tables
toPairBiobase.RNA
toShapeBiobase.Structure.Shapes
toShape1Biobase.Structure.Shapes
toShape2Biobase.Structure.Shapes
toShape3Biobase.Structure.Shapes
toShape4Biobase.Structure.Shapes
toShape5Biobase.Structure.Shapes
toSSTreeBiobase.Structure
toStringBiobase.Infernal.CM.Export
Transition 
1 (Type/Class)Biobase.Infernal.CM
2 (Data Constructor)Biobase.Infernal.CM
transitionTargetsBiobase.Infernal.CM
tscoreBiobase.Infernal.CM
tuple2RevViennaBiobase.RNA
tuple2ViennaBiobase.RNA
Turner2004 
1 (Type/Class)Biobase.Turner.Tables
2 (Data Constructor)Biobase.Turner.Tables
turner2004GHBiobase.Vienna.Default
TurnerEnthalpyBiobase.Turner
TurnerEntropyBiobase.Turner
TurnerSetBiobase.Turner
TurnerTablesBiobase.Turner
unEnergyBiobase.Types.Energy
unKelvinBiobase.Types.Convert
unknownBiobase.Infernal.Stockholm
unPartitionBiobase.Types.Partition
unPartition'Biobase.Types.Partition
unPrimaryBiobase.RNA
unScoreBiobase.Types.Score
vienna2RevTupleBiobase.RNA
vienna2TupleBiobase.RNA
ViennaEnergyTablesBiobase.Vienna
ViennaIntTablesBiobase.Vienna
ViennaPair 
1 (Type/Class)Biobase.RNA
2 (Data Constructor)Biobase.RNA
ViennaPartitionTablesBiobase.Vienna
vpAUBiobase.RNA
vpCGBiobase.RNA
vpGCBiobase.RNA
vpGUBiobase.RNA
vpNPBiobase.RNA
vpNSBiobase.RNA
vpStrListBiobase.RNA
vpUABiobase.RNA
vpUGBiobase.RNA
zeroBiobase.Types.Ring
zipWithPABiobase.Turner.Tables