Index
| AASubstMat | |
| 1 (Type/Class) | Biobase.SubstMatrix |
| 2 (Data Constructor) | Biobase.SubstMatrix |
| aaSubstMat | Biobase.SubstMatrix |
| alignmentLength | Biobase.BLAST.Types, Biobase.BLAST |
| aminoacidLetters | Biobase.BLAST.Import |
| ANuc1SubstMat | |
| 1 (Type/Class) | Biobase.SubstMatrix |
| 2 (Data Constructor) | Biobase.SubstMatrix |
| anuc1SubstMat | Biobase.SubstMatrix |
| ANuc2SubstMat | |
| 1 (Type/Class) | Biobase.SubstMatrix |
| 2 (Data Constructor) | Biobase.SubstMatrix |
| anuc2SubstMat | Biobase.SubstMatrix |
| ANuc3SubstMat | |
| 1 (Type/Class) | Biobase.SubstMatrix |
| 2 (Data Constructor) | Biobase.SubstMatrix |
| anuc3SubstMat | Biobase.SubstMatrix |
| bioLetters | Biobase.BLAST.Import |
| bitScore | Biobase.BLAST.Types, Biobase.BLAST |
| blastDatabase | Biobase.BLAST.Types, Biobase.BLAST |
| blastFromFile | Biobase.BLAST.Import, Biobase.BLAST |
| blastHitNumber | Biobase.BLAST.Types, Biobase.BLAST |
| BlastN | Biobase.BLAST.Types, Biobase.BLAST |
| BlastP | Biobase.BLAST.Types, Biobase.BLAST |
| BlastProgram | Biobase.BLAST.Types, Biobase.BLAST |
| blastProgram | Biobase.BLAST.Types, Biobase.BLAST |
| blastQueryId | Biobase.BLAST.Types, Biobase.BLAST |
| BlastTabularHit | |
| 1 (Type/Class) | Biobase.BLAST.Types, Biobase.BLAST |
| 2 (Data Constructor) | Biobase.BLAST.Types, Biobase.BLAST |
| BlastTabularResult | |
| 1 (Type/Class) | Biobase.BLAST.Types, Biobase.BLAST |
| 2 (Data Constructor) | Biobase.BLAST.Types, Biobase.BLAST |
| BlastX | Biobase.BLAST.Types, Biobase.BLAST |
| Distance | Biobase.SubstMatrix |
| eValue | Biobase.BLAST.Types, Biobase.BLAST |
| fromFile | Biobase.SubstMatrix.Import |
| gapOpenScore | Biobase.BLAST.Types, Biobase.BLAST |
| genParseBlastProgram | Biobase.BLAST.Import |
| genParseBlastTabularHit | Biobase.BLAST.Import |
| genParseFieldLine | Biobase.BLAST.Import |
| genParseTabularBlast | Biobase.BLAST.Import |
| hitLines | Biobase.BLAST.Types, Biobase.BLAST |
| hitSeqEnd | Biobase.BLAST.Types, Biobase.BLAST |
| hitSeqStart | Biobase.BLAST.Types, Biobase.BLAST |
| misMatches | Biobase.BLAST.Types, Biobase.BLAST |
| mkANuc1SubstMat | Biobase.SubstMatrix |
| mkANuc2SubstMat | Biobase.SubstMatrix |
| mkANuc3SubstMat | Biobase.SubstMatrix |
| nucleotideLetters | Biobase.BLAST.Import |
| parseTabularBlasts | Biobase.BLAST.Import |
| queryEnd | Biobase.BLAST.Types, Biobase.BLAST |
| queryId | Biobase.BLAST.Types, Biobase.BLAST |
| querySeq | Biobase.BLAST.Types, Biobase.BLAST |
| queryStart | Biobase.BLAST.Types, Biobase.BLAST |
| seqIdentity | Biobase.BLAST.Types, Biobase.BLAST |
| Similarity | Biobase.SubstMatrix |
| subjectFrame | Biobase.BLAST.Types, Biobase.BLAST |
| subjectId | Biobase.BLAST.Types, Biobase.BLAST |
| subjectSeq | Biobase.BLAST.Types, Biobase.BLAST |
| SubstBLOSUM | Biobase.SubstMatrix |
| SubstPAM | Biobase.SubstMatrix |
| toLB | Biobase.BLAST.Import |