name: BiobaseFR3D version: 0.2.3.0 author: Christian Hoener zu Siederdissen maintainer: choener@tbi.univie.ac.at homepage: http://www.tbi.univie.ac.at/~choener/ copyright: Christian Hoener zu Siederdissen, 2011 category: Bioinformatics synopsis: Importer for FR3D resources license: GPL-3 license-file: LICENSE build-type: Simple stability: experimental cabal-version: >= 1.4.0 description: Provides importers for FR3D resource files. Of particular interest are basepairs files which describe canonical and non-canonical (non-Watson-Crick) base pairings in RNA secondary structure. . The original FR3D paper is: . FR3D: Finding Local and Composite Recurrent Structural Motifs in RNA 3D Structures, Michael Sarver; Craig L. Zirbel; Jesse Stombaugh; Ali Mokdad; Neocles B. Leontis. /Journal of Mathematical Biology/ (2008) 56:215–252. . Changes since any 0.1.*: . * Zero-based indexing (FR3D is one-based!) for sequence positions. We do not change the nucleotide PDB number. . * Some sanity checks, a number of FR3D files fall through at this and need to be checked for consistency extra-source-files: library build-depends: base >3 && <5, bytestring, containers, filemanip, iteratee, tuple, BiobaseXNA == 0.6.2.0 exposed-modules: Biobase.FR3D Biobase.FR3D.Import ghc-options: -O2