BiobaseFasta: Iteratee-based FASTA parser
Enumeratees for FASTA-handling and convenience functions. In a typical application, the user should write an enumeratee to extract information to allow for efficient low-memory handling of queries.
Facilities for fast, efficient linear scans are provided. These functions are not yet stable and could move to another library, if more data sources require efficient scans.
The library is, in general, in a "preview" state. In cases where you need to scan large FASTA files fast and with low memory overhead, the enumeratees should, however, already be useable enough.
Flags
Automatic Flags
| Name | Description | Default |
|---|---|---|
| tests | Disabled |
Use -f <flag> to enable a flag, or -f -<flag> to disable that flag. More info
Downloads
- BiobaseFasta-0.0.0.2.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
Maintainer's Corner
For package maintainers and hackage trustees
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| Versions [RSS] | 0.0.0.1, 0.0.0.2, 0.0.0.3, 0.0.0.4, 0.0.1.0, 0.2.0.0, 0.3.0.0, 0.3.0.1, 0.4.0.0, 0.4.0.1 |
|---|---|
| Dependencies | base (>3 && <5), bytestring, iteratee, iteratee-compress, transformers [details] |
| License | GPL-3.0-only |
| Copyright | Christian Hoener zu Siederdissen, 2011 |
| Author | Christian Hoener zu Siederdissen |
| Maintainer | choener@tbi.univie.ac.at |
| Category | Bioinformatics |
| Home page | http://www.tbi.univie.ac.at/~choener/ |
| Source repo | head: git clone git://github.com/choener/BiobaseFasta |
| Uploaded | by ChristianHoener at 2012-01-15T17:52:31Z |
| Distributions | |
| Reverse Dependencies | 4 direct, 0 indirect [details] |
| Executables | Test |
| Downloads | 7276 total (25 in the last 30 days) |
| Rating | (no votes yet) [estimated by Bayesian average] |
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| Status | Docs uploaded by user Build status unknown [no reports yet] |