BiobaseFasta: conduit-based FASTA parser
Conduit-based handling of FASTA files. This library provides a streaming interface. The user selects a window size, then handles the window. For each window, the previous (past) window is available, in case some data sits on the boundary between windows.
FastaTool is a simple tool providing information on FASTA files, and allowing to extract sequences and subsequences.
The library is, in general, in a "preview" state. In cases
where you need to scan large FASTA files fast and with low
memory overhead, the streamFasta function, however, should
already be useable enough.
Downloads
- BiobaseFasta-0.0.1.0.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
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For package maintainers and hackage trustees
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| Versions [RSS] | 0.0.0.1, 0.0.0.2, 0.0.0.3, 0.0.0.4, 0.0.1.0, 0.2.0.0, 0.3.0.0, 0.3.0.1, 0.4.0.0, 0.4.0.1 |
|---|---|
| Change log | changelog |
| Dependencies | base (>3 && <5), biocore (>=0.2), bytestring, cmdargs (>=0.10 && <0.11), conduit (>=0.5 && <0.6), containers, transformers [details] |
| License | GPL-3.0-only |
| Copyright | Christian Hoener zu Siederdissen, 2011-2013 |
| Author | Christian Hoener zu Siederdissen |
| Maintainer | choener@tbi.univie.ac.at |
| Category | Bioinformatics |
| Home page | http://www.tbi.univie.ac.at/~choener/ |
| Source repo | head: git clone git://github.com/choener/BiobaseFasta |
| Uploaded | by ChristianHoener at 2013-12-06T21:54:37Z |
| Distributions | |
| Reverse Dependencies | 4 direct, 0 indirect [details] |
| Executables | FastaTool |
| Downloads | 7277 total (26 in the last 30 days) |
| Rating | (no votes yet) [estimated by Bayesian average] |
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| Status | Docs available [build log] Successful builds reported [all 1 reports] |