Safe Haskell	Safe
Language	Haskell98

Biobase.Entrez.HTTPData

Description

Data structures for Entrez HTTP queries

Synopsis

data EntrezHTTPQuery = EntrezHTTPQuery {
- program :: Maybe String
- database :: Maybe String
- query :: String
}
newtype EntrezSummary = EntrezSummary {
- documentSummaries :: [EntrezDocSum]
}
data EntrezDocSum = EntrezDocSum {
- summaryId :: String
- summaryItems :: [SummaryItem]
}
data SummaryItem = SummaryItem {
- itemName :: String
- itemType :: String
- itemContent :: String
}
newtype EntrezGeneSummary = EntrezGeneSummary {
- geneSummaries :: [EntrezGeneDocSummary]
}
data EntrezGeneDocSummary = EntrezGeneDocSummary {
- geneId :: String
- geneName :: String
- geneStatus :: String
- geneCurrentID :: String
- geneGeneticSource :: String
- geneOtherAliases :: String
- geneGenomicInfo :: EntrezGenomicInfo
}
data EntrezGenomicInfo = EntrezGenomicInfo {
- chrAccVer :: String
- chrStart :: Int
- chrStop :: Int
- exonCount :: Int
}
data EntrezSearch = EntrezSearch {
- count :: Int
- retMax :: Int
- retStart :: Int
- searchIds :: [Int]
- translationStack :: [TranslationStack]
- queryTranslation :: String
}
data TranslationStack = TranslationStack {
- termSets :: [TermSet]
- operation :: String
}
data TermSet = TermSet {
- term :: String
- field :: String
- termCount :: Int
- explode :: String
}

Documentation

data EntrezHTTPQuery Source #

Input datastructure for EntrezHTTP. Program is the selected eutility (e.g efetch, esearch), database is the selected Entrez database (nucleotide) and query the query string.

Constructors

EntrezHTTPQuery
Fields program :: Maybe String database :: Maybe String query :: String

Instances

Eq EntrezHTTPQuery Source #
Instance details Defined in Biobase.Entrez.HTTPData Methods (==) :: EntrezHTTPQuery -> EntrezHTTPQuery -> Bool # (/=) :: EntrezHTTPQuery -> EntrezHTTPQuery -> Bool #
Show EntrezHTTPQuery Source #
Instance details Defined in Biobase.Entrez.HTTPData Methods showsPrec :: Int -> EntrezHTTPQuery -> ShowS # show :: EntrezHTTPQuery -> String # showList :: [EntrezHTTPQuery] -> ShowS #

newtype EntrezSummary Source #

Data structure for Entrez summary result

Constructors

EntrezSummary
Fields documentSummaries :: [EntrezDocSum]

Instances

Eq EntrezSummary Source #
Instance details Defined in Biobase.Entrez.HTTPData Methods (==) :: EntrezSummary -> EntrezSummary -> Bool # (/=) :: EntrezSummary -> EntrezSummary -> Bool #
Show EntrezSummary Source #
Instance details Defined in Biobase.Entrez.HTTPData Methods showsPrec :: Int -> EntrezSummary -> ShowS # show :: EntrezSummary -> String # showList :: [EntrezSummary] -> ShowS #

data EntrezDocSum Source #

Constructors

EntrezDocSum
Fields summaryId :: String summaryItems :: [SummaryItem]

Instances

Eq EntrezDocSum Source #
Instance details Defined in Biobase.Entrez.HTTPData Methods (==) :: EntrezDocSum -> EntrezDocSum -> Bool # (/=) :: EntrezDocSum -> EntrezDocSum -> Bool #
Show EntrezDocSum Source #
Instance details Defined in Biobase.Entrez.HTTPData Methods showsPrec :: Int -> EntrezDocSum -> ShowS # show :: EntrezDocSum -> String # showList :: [EntrezDocSum] -> ShowS #

data SummaryItem Source #

Constructors

SummaryItem
Fields itemName :: String itemType :: String itemContent :: String

Instances

Eq SummaryItem Source #
Instance details Defined in Biobase.Entrez.HTTPData Methods (==) :: SummaryItem -> SummaryItem -> Bool # (/=) :: SummaryItem -> SummaryItem -> Bool #
Show SummaryItem Source #
Instance details Defined in Biobase.Entrez.HTTPData Methods showsPrec :: Int -> SummaryItem -> ShowS # show :: SummaryItem -> String # showList :: [SummaryItem] -> ShowS #

newtype EntrezGeneSummary Source #

Gene doc summary

Constructors

EntrezGeneSummary
Fields geneSummaries :: [EntrezGeneDocSummary]

Instances

Eq EntrezGeneSummary Source #
Instance details Defined in Biobase.Entrez.HTTPData Methods (==) :: EntrezGeneSummary -> EntrezGeneSummary -> Bool # (/=) :: EntrezGeneSummary -> EntrezGeneSummary -> Bool #
Show EntrezGeneSummary Source #
Instance details Defined in Biobase.Entrez.HTTPData Methods showsPrec :: Int -> EntrezGeneSummary -> ShowS # show :: EntrezGeneSummary -> String # showList :: [EntrezGeneSummary] -> ShowS #

data EntrezGeneDocSummary Source #

Constructors

EntrezGeneDocSummary
Fields geneId :: String geneName :: String geneStatus :: String geneCurrentID :: String geneGeneticSource :: String geneOtherAliases :: String geneGenomicInfo :: EntrezGenomicInfo

Instances

Eq EntrezGeneDocSummary Source #
Instance details Defined in Biobase.Entrez.HTTPData Methods (==) :: EntrezGeneDocSummary -> EntrezGeneDocSummary -> Bool # (/=) :: EntrezGeneDocSummary -> EntrezGeneDocSummary -> Bool #
Show EntrezGeneDocSummary Source #
Instance details Defined in Biobase.Entrez.HTTPData Methods showsPrec :: Int -> EntrezGeneDocSummary -> ShowS # show :: EntrezGeneDocSummary -> String # showList :: [EntrezGeneDocSummary] -> ShowS #

data EntrezGenomicInfo Source #

Constructors

EntrezGenomicInfo
Fields chrAccVer :: String chrStart :: Int chrStop :: Int exonCount :: Int

Instances

Eq EntrezGenomicInfo Source #
Instance details Defined in Biobase.Entrez.HTTPData Methods (==) :: EntrezGenomicInfo -> EntrezGenomicInfo -> Bool # (/=) :: EntrezGenomicInfo -> EntrezGenomicInfo -> Bool #
Show EntrezGenomicInfo Source #
Instance details Defined in Biobase.Entrez.HTTPData Methods showsPrec :: Int -> EntrezGenomicInfo -> ShowS # show :: EntrezGenomicInfo -> String # showList :: [EntrezGenomicInfo] -> ShowS #

data EntrezSearch Source #

Data structure for Entrez search result

Constructors

EntrezSearch
Fields count :: Int retMax :: Int retStart :: Int searchIds :: [Int] translationStack :: [TranslationStack] queryTranslation :: String

Instances

Eq EntrezSearch Source #
Instance details Defined in Biobase.Entrez.HTTPData Methods (==) :: EntrezSearch -> EntrezSearch -> Bool # (/=) :: EntrezSearch -> EntrezSearch -> Bool #
Show EntrezSearch Source #
Instance details Defined in Biobase.Entrez.HTTPData Methods showsPrec :: Int -> EntrezSearch -> ShowS # show :: EntrezSearch -> String # showList :: [EntrezSearch] -> ShowS #

data TranslationStack Source #

Constructors

TranslationStack
Fields termSets :: [TermSet] operation :: String

Instances

Eq TranslationStack Source #
Instance details Defined in Biobase.Entrez.HTTPData Methods (==) :: TranslationStack -> TranslationStack -> Bool # (/=) :: TranslationStack -> TranslationStack -> Bool #
Show TranslationStack Source #
Instance details Defined in Biobase.Entrez.HTTPData Methods showsPrec :: Int -> TranslationStack -> ShowS # show :: TranslationStack -> String # showList :: [TranslationStack] -> ShowS #

data TermSet Source #

Constructors

TermSet
Fields term :: String field :: String termCount :: Int explode :: String

Instances

Eq TermSet Source #
Instance details Defined in Biobase.Entrez.HTTPData Methods (==) :: TermSet -> TermSet -> Bool # (/=) :: TermSet -> TermSet -> Bool #
Show TermSet Source #
Instance details Defined in Biobase.Entrez.HTTPData Methods showsPrec :: Int -> TermSet -> ShowS # show :: TermSet -> String # showList :: [TermSet] -> ShowS #