Biobase.Infernal.Taxonomy.Import
- eeImport :: Monad m => Enumeratee ByteString Species m b
- iSpeciesMap :: Monad m => Iteratee Species m (Map ByteString Species)
- iTaxIdMap :: Monad m => Iteratee Species m (Map Int Species)
Documentation
eeImport :: Monad m => Enumeratee ByteString Species m bSource
Imports taxonomy data.
NOTE The taxonomy format is, for each species, a line consisting of: taxid - tab - species name - tab - semicolon separated list of classification names - dot - end of line.
iSpeciesMap :: Monad m => Iteratee Species m (Map ByteString Species)Source
Provide name-based lookup as the most-common usage scenario.
TODO there are 9 duplicates in the names, let's find them and see what is going on