The BiobaseInfernal package

[Tags: gpl, library]

Provides import and export facilities for Infernal/Rfam data formats. We include Stockholm, CM, verbose Infernal results, and tabulated Infernal results. Some small tools are included.

The VerboseHit format is slightly extended to allow simple annotations. This extension should be backward-compatible with standard-compliant parsers.

With the BioHaskell library split, this package is officially back! And the package is not feature-complete yet, take the above as a will-include-soon list.

The taxonomy importer makes use of Iteratee.zip, hence the switch from Enumerator. (See the Biohaskell wiki pages for discussion on Iteratee/Enumerator).


Properties

Versions0.0.2.0, 0.0.2.1, 0.5.0.0, 0.5.1.0, 0.5.2.0, 0.5.3.0, 0.5.3.1, 0.5.4.0, 0.5.4.1, 0.6.0.0, 0.6.0.1, 0.6.2.0, 0.7.0.0, 0.7.0.1, 0.7.1.0
Dependenciesattoparsec, attoparsec-iteratee, base (>3 && <5), bytestring, containers, either-unwrap, iteratee, transformers, tuple
LicenseGPL-3
CopyrightChristian Hoener zu Siederdissen, 2011
AuthorChristian Hoener zu Siederdissen
Maintainerchoener@tbi.univie.ac.at
Stabilityexperimental
CategoryBioinformatics
Home pagehttp://www.tbi.univie.ac.at/~choener/
Upload dateTue Aug 9 00:21:09 UTC 2011
Uploaded byChristianHoener
Downloads1432 total (120 in last 30 days)

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