The BiobaseInfernal package

[Tags:gpl, library]

Provides import and export facilities for Infernal/Rfam data formats. We include Stockholm, CM, verbose Infernal results, and tabulated Infernal results. Some small tools are included.

The VerboseHit format is slightly extended to allow simple annotations. This extension should be backward-compatible with standard-compliant parsers.

With the BioHaskell library split, this package is officially back! And the package is not feature-complete yet, take the above as a will-include-soon list.

The taxonomy importer makes use of Iteratee.zip, hence the switch from Enumerator. (See the Biohaskell wiki pages for discussion on Iteratee/Enumerator).

Properties

Versions 0.0.2.0, 0.0.2.1, 0.5.0.0, 0.5.1.0, 0.5.2.0, 0.5.3.0, 0.5.3.1, 0.5.4.0, 0.5.4.1, 0.6.0.0, 0.6.0.1, 0.6.2.0, 0.7.0.0, 0.7.0.1, 0.7.1.0
Dependencies attoparsec, attoparsec-iteratee, base (>3 && <5), bytestring, containers, either-unwrap, iteratee, transformers, tuple [details]
License GPL-3
Copyright Christian Hoener zu Siederdissen, 2011
Author Christian Hoener zu Siederdissen
Maintainer choener@tbi.univie.ac.at
Stability experimental
Category Bioinformatics
Home page http://www.tbi.univie.ac.at/~choener/
Uploaded Tue Aug 9 00:21:09 UTC 2011 by ChristianHoener
Distributions NixOS:0.7.1.0
Downloads 4089 total (47 in the last 30 days)
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Status Docs uploaded by user
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