ACAC2RfamFasta | Biobase.Infernal.RfamFasta |
accession | Biobase.Infernal.CM |
aliAnnotation | Biobase.Infernal.VerboseHit.Internal |
aliCM | Biobase.Infernal.VerboseHit.Internal |
AliGo | |
1 (Type/Class) | Biobase.Infernal.VerboseHit.Internal |
2 (Data Constructor) | Biobase.Infernal.VerboseHit.Internal |
aliScaffold | Biobase.Infernal.VerboseHit.Internal |
aliStrand | Biobase.Infernal.VerboseHit.Internal |
begins | Biobase.Infernal.CM |
BitScore | |
1 (Type/Class) | Biobase.Infernal.Types |
2 (Data Constructor) | Biobase.Infernal.Types |
bitScore | Biobase.Infernal.Hit |
cAccession | Biobase.Infernal.Clan, Biobase.Infernal |
cFromFile | Biobase.Infernal |
cIdentifier | Biobase.Infernal.Clan, Biobase.Infernal |
Clan | |
1 (Type/Class) | Biobase.Infernal.Clan, Biobase.Infernal |
2 (Data Constructor) | Biobase.Infernal.Clan, Biobase.Infernal |
ClanAccession | |
1 (Type/Class) | Biobase.Infernal.Types |
2 (Data Constructor) | Biobase.Infernal.Types |
ClanIdentification | |
1 (Type/Class) | Biobase.Infernal.Types |
2 (Data Constructor) | Biobase.Infernal.Types |
Classification | |
1 (Type/Class) | Biobase.Infernal.Types |
2 (Data Constructor) | Biobase.Infernal.Types |
CM | |
1 (Type/Class) | Biobase.Infernal.CM |
2 (Data Constructor) | Biobase.Infernal.CM |
cMembers | Biobase.Infernal.Clan, Biobase.Infernal |
cStrings | Biobase.Infernal.Clan, Biobase.Infernal |
EmblAccession | |
1 (Type/Class) | Biobase.Infernal.Types |
2 (Data Constructor) | Biobase.Infernal.Types |
emission | Biobase.Infernal.CM |
eneeByteString | Biobase.Infernal.VerboseHit.Export |
eneeByteStrings | Biobase.Infernal.VerboseHit.Export |
eneeCM | Biobase.Infernal.CM.Import |
eneeRfamFasta | Biobase.Infernal.RfamFasta.Import |
eneeSpecies | Biobase.Infernal.Taxonomy.Import |
eneeTabularHit | Biobase.Infernal.TabularHit.Import, Biobase.Infernal |
eneeVerboseHit | Biobase.Infernal.VerboseHit.Import, Biobase.Infernal |
evalue | Biobase.Infernal.Hit |
fastaData | Biobase.Infernal.RfamFasta |
fromByteString | Biobase.Infernal.Clan.Import |
fromFile | |
1 (Function) | Biobase.Infernal.CM.Import |
2 (Function) | Biobase.Infernal.RfamFasta.Import |
3 (Function) | Biobase.Infernal.Clan.Import |
4 (Function) | Biobase.Infernal.Taxonomy.Import |
5 (Function) | Biobase.Infernal.VerboseHit.Import |
6 (Function) | Biobase.Infernal.TabularHit.Import |
fromFileZip | Biobase.Infernal.RfamFasta.Import |
ga | Biobase.Infernal.CM |
gcPercent | Biobase.Infernal.Hit |
Hit | Biobase.Infernal.Hit |
iACAC2RfamFasta | Biobase.Infernal.RfamFasta.Import |
IDAC2RfamFasta | Biobase.Infernal.RfamFasta |
iIDAC2RfamFasta | Biobase.Infernal.RfamFasta.Import |
iModelAC2ID | Biobase.Infernal.RfamFasta.Import |
iModelID2AC | Biobase.Infernal.RfamFasta.Import |
iSpeciesMap | Biobase.Infernal.Taxonomy.Import |
iTaxIdMap | Biobase.Infernal.Taxonomy.Import |
localBegin | Biobase.Infernal.CM |
localEnd | Biobase.Infernal.CM |
mkClan | Biobase.Infernal.Clan.Import |
mkEmblAccession | Biobase.Infernal.Types |
mkSpecies | Biobase.Infernal.Taxonomy.Import |
model | Biobase.Infernal.Hit |
ModelAC2ID | Biobase.Infernal.RfamFasta |
ModelAccession | |
1 (Type/Class) | Biobase.Infernal.Types |
2 (Data Constructor) | Biobase.Infernal.Types |
modelAccession | Biobase.Infernal.RfamFasta |
ModelID2AC | Biobase.Infernal.RfamFasta |
ModelIdentification | |
1 (Type/Class) | Biobase.Infernal.Types |
2 (Data Constructor) | Biobase.Infernal.Types |
modelIdentifier | Biobase.Infernal.RfamFasta |
modelStart | Biobase.Infernal.Hit |
modelStop | Biobase.Infernal.Hit |
name | Biobase.Infernal.CM |
nc | Biobase.Infernal.CM |
newAcc | Biobase.Infernal.VerboseHit.Export |
nodes | Biobase.Infernal.CM |
paths | Biobase.Infernal.CM |
RfamFasta | |
1 (Type/Class) | Biobase.Infernal.RfamFasta |
2 (Data Constructor) | Biobase.Infernal.RfamFasta |
Scaffold | |
1 (Type/Class) | Biobase.Infernal.Types |
2 (Data Constructor) | Biobase.Infernal.Types |
sequenceAccession | Biobase.Infernal.RfamFasta |
shortenName | Biobase.Infernal.Taxonomy |
showVerboseHit | Biobase.Infernal.VerboseHit.Export |
SpeciesAccession | |
1 (Type/Class) | Biobase.Infernal.Types |
2 (Data Constructor) | Biobase.Infernal.Types |
speciesAccession | Biobase.Infernal.RfamFasta |
SpeciesName | |
1 (Type/Class) | Biobase.Infernal.Types |
2 (Data Constructor) | Biobase.Infernal.Types |
speciesName | Biobase.Infernal.RfamFasta |
SpeciesTaxonomy | |
1 (Type/Class) | Biobase.Infernal.Taxonomy, Biobase.Infernal |
2 (Data Constructor) | Biobase.Infernal.Taxonomy, Biobase.Infernal |
stAccession | Biobase.Infernal.Taxonomy, Biobase.Infernal |
stClassification | Biobase.Infernal.Taxonomy, Biobase.Infernal |
stName | Biobase.Infernal.Taxonomy, Biobase.Infernal |
Strand | Biobase.Infernal.VerboseHit |
StrictSeqData | |
1 (Type/Class) | Biobase.Infernal.Types |
2 (Data Constructor) | Biobase.Infernal.Types |
TabularHit | |
1 (Type/Class) | Biobase.Infernal.TabularHit, Biobase.Infernal |
2 (Data Constructor) | Biobase.Infernal.TabularHit, Biobase.Infernal |
target | Biobase.Infernal.Hit |
targetStart | Biobase.Infernal.Hit |
targetStop | Biobase.Infernal.Hit |
tc | Biobase.Infernal.CM |
tFromFile | Biobase.Infernal |
thBitScore | Biobase.Infernal.TabularHit, Biobase.Infernal |
thEvalue | Biobase.Infernal.TabularHit, Biobase.Infernal |
thFromFile | Biobase.Infernal |
thGCpercent | Biobase.Infernal.TabularHit, Biobase.Infernal |
thModel | Biobase.Infernal.TabularHit, Biobase.Infernal |
thModelStart | Biobase.Infernal.TabularHit, Biobase.Infernal |
thModelStop | Biobase.Infernal.TabularHit, Biobase.Infernal |
thTarget | Biobase.Infernal.TabularHit, Biobase.Infernal |
thTargetStart | Biobase.Infernal.TabularHit, Biobase.Infernal |
thTargetStop | Biobase.Infernal.TabularHit, Biobase.Infernal |
transition | Biobase.Infernal.CM |
unBitScore | Biobase.Infernal.Types |
unClanAccession | Biobase.Infernal.Types |
unClanIdentification | Biobase.Infernal.Types |
unClassification | Biobase.Infernal.Types |
unEmblAccession | Biobase.Infernal.Types |
unModelAccession | Biobase.Infernal.Types |
unModelIdentification | Biobase.Infernal.Types |
unScaffold | Biobase.Infernal.Types |
unSpeciesAccession | Biobase.Infernal.Types |
unSpeciesName | Biobase.Infernal.Types |
unStrictSeqData | Biobase.Infernal.Types |
VerboseHit | |
1 (Type/Class) | Biobase.Infernal.VerboseHit, Biobase.Infernal |
2 (Data Constructor) | Biobase.Infernal.VerboseHit, Biobase.Infernal |
vhAnnotation | Biobase.Infernal.VerboseHit, Biobase.Infernal |
vhBitScore | Biobase.Infernal.VerboseHit, Biobase.Infernal |
vhConsensus | Biobase.Infernal.VerboseHit, Biobase.Infernal |
vhEneeByteString | Biobase.Infernal |
vhEneeByteStrings | Biobase.Infernal |
vhEvalue | Biobase.Infernal.VerboseHit, Biobase.Infernal |
vhFromFile | Biobase.Infernal |
vhGCpercent | Biobase.Infernal.VerboseHit, Biobase.Infernal |
vhModel | Biobase.Infernal.VerboseHit, Biobase.Infernal |
vhModelStart | Biobase.Infernal.VerboseHit, Biobase.Infernal |
vhModelStop | Biobase.Infernal.VerboseHit, Biobase.Infernal |
vhPvalue | Biobase.Infernal.VerboseHit, Biobase.Infernal |
vhScoring | Biobase.Infernal.VerboseHit, Biobase.Infernal |
vhSequence | Biobase.Infernal.VerboseHit, Biobase.Infernal |
vhStrand | Biobase.Infernal.VerboseHit, Biobase.Infernal |
vhTarget | Biobase.Infernal.VerboseHit, Biobase.Infernal |
vhTargetStart | Biobase.Infernal.VerboseHit, Biobase.Infernal |
vhTargetStop | Biobase.Infernal.VerboseHit, Biobase.Infernal |
vhWuss | Biobase.Infernal.VerboseHit, Biobase.Infernal |