The BiobaseInfernal package

[Tags: gpl, library]

Provides import and export facilities for Infernal/Rfam data formats. We include Stockholm, CM, verbose Infernal results, and tabulated Infernal results. Some small tools are included.

The VerboseHit format is slightly extended to allow simple annotations. This extension should be backward-compatible with standard-compliant parsers.

This package uses Int's to store sequence position information. Don't compile for 32bit. (And yes, this is a TODO, to change to Int64).

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Dependenciesattoparsec, attoparsec-iteratee, base (>3 && <5), biocore, bytestring, containers, either-unwrap, iteratee, iteratee-compress, PrimitiveArray, transformers, tuple, vector
CopyrightChristian Hoener zu Siederdissen, 2011
AuthorChristian Hoener zu Siederdissen
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UploadedMon Dec 5 00:07:06 UTC 2011 by ChristianHoener
Downloads2070 total (163 in last 30 days)
StatusDocs uploaded by user
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