The BiobaseInfernal package

[Tags: gpl, library]

Provides import and export facilities for Infernal/Rfam data formats. We include Stockholm, CM, verbose Infernal results, and tabulated Infernal results. Some small tools are included.

The VerboseHit format is slightly extended to allow simple annotations. This extension should be backward-compatible with standard-compliant parsers.

This package uses Int's to store sequence position information. Don't compile for 32bit. (And yes, this is a TODO, to change to Int64).

Changes in 0.7.0.0


Properties

Versions0.0.2.0, 0.0.2.1, 0.5.0.0, 0.5.1.0, 0.5.2.0, 0.5.3.0, 0.5.3.1, 0.5.4.0, 0.5.4.1, 0.6.0.0, 0.6.0.1, 0.6.2.0, 0.7.0.0, 0.7.0.1, 0.7.1.0
Dependenciesattoparsec (==0.10.*), attoparsec-conduit (==0.5.*), base (>3 && <5), BiobaseXNA (==0.6.3.*), biocore (==0.2), bytestring, bytestring-lexing (==0.4.*), conduit (==0.5.*), containers, either-unwrap (==1.1), lens (==3.*), primitive (>=0.5), PrimitiveArray (>=0.4.0.1), transformers (==0.3.*), tuple (==0.2.*), vector (>=0.10)
LicenseGPL-3
CopyrightChristian Hoener zu Siederdissen, 2011
AuthorChristian Hoener zu Siederdissen
Maintainerchoener@tbi.univie.ac.at
Stabilityexperimental
CategoryBioinformatics
Home pagehttp://www.tbi.univie.ac.at/~choener/
Source repositoryhead: git clone git://github.com/choener/BiobaseInfernal
Upload dateThu Nov 22 14:36:33 UTC 2012
Uploaded byChristianHoener
Downloads2018 total (213 in last 30 days)

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