The BiobaseInfernal package

[Tags:benchmark, gpl, library, program, test]

Provides import and export facilities for Infernal/Rfam data formats. We include Stockholm, CM, verbose Infernal results, and tabulated Infernal results. Some small tools are included.

The VerboseHit format is slightly extended to allow simple annotations. This extension should be backward-compatible with standard-compliant parsers.

This package uses Int's to store sequence position information. Don't compile for 32bit. (And yes, this is a TODO, to change to Int64).

Changes in


Dependencies attoparsec (==0.10.*), attoparsec-conduit (==0.5.*), base (>3 && <5), BiobaseXNA (==0.6.3.*), biocore (==0.2), bytestring, bytestring-lexing (==0.4.*), conduit (==0.5.*), containers, either-unwrap (==1.1), lens (==3.*), primitive (>=0.5), PrimitiveArray (>=, transformers (==0.3.*), tuple (==0.2.*), vector (>=0.10) [details]
License GPL-3
Copyright Christian Hoener zu Siederdissen, 2011
Author Christian Hoener zu Siederdissen
Category Bioinformatics
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Source repository head: git clone git://
Uploaded Thu Nov 22 14:36:33 UTC 2012 by ChristianHoener
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Downloads 4690 total (33 in the last 30 days)
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Status Docs uploaded by user
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