The BiobaseInfernal package

[ Tags: benchmark, bioinformatics, gpl, library, program ] [ Propose Tags ]

Provides import and export facilities for Infernal/Rfam data formats. We include Stockholm, CM, verbose Infernal results, and tabulated Infernal results. Some small tools are included.

The VerboseHit format is slightly extended to allow simple annotations. This extension should be backward-compatible with standard-compliant parsers.

This package uses Int's to store sequence position information. Don't compile for 32bit. (And yes, this is a TODO, to change to Int64).

Changes in 0.7.1.0

Changes in 0.7.0.0

Properties

Versions 0.0.2.0, 0.0.2.1, 0.5.0.0, 0.5.1.0, 0.5.2.0, 0.5.3.0, 0.5.3.1, 0.5.4.0, 0.5.4.1, 0.6.0.0, 0.6.0.1, 0.6.2.0, 0.7.0.0, 0.7.0.1, 0.7.1.0, 0.8.1.0
Dependencies attoparsec (==0.10.*), attoparsec-conduit (==0.5.*), base (>3 && <5), BiobaseXNA (==0.7.*), biocore (==0.2), bytestring, bytestring-lexing (==0.4.*), conduit (==0.5.*), containers, either-unwrap (==1.1), lens (==3.*), primitive (>=0.5), PrimitiveArray (==0.5.*), repa (==3.2.*), transformers (==0.3.*), tuple (==0.2.*), vector (>=0.10) [details]
License GPL-3
Copyright Christian Hoener zu Siederdissen, 2011
Author Christian Hoener zu Siederdissen
Maintainer choener@tbi.univie.ac.at
Category Bioinformatics
Home page http://www.tbi.univie.ac.at/~choener/
Source repository head: git clone git://github.com/choener/BiobaseInfernal
Uploaded Fri Sep 20 14:28:00 UTC 2013 by ChristianHoener
Distributions NixOS:0.8.1.0
Downloads 5548 total (355 in the last 30 days)
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