The BiobaseTrainingData package
Parameter training for RNA secondary structure prediction tools requires data to train on. Since there are a number of different available formats, and handling them all in the training tools is a pain, we have this library and programs. MkTrainingData transforms different formats and they all produce a common training data format. This format is Haskell-readable (and only partially human-readable) line-by-line. Generating additional training data is therefor easy as one can just cat together different training files.
Note that several features are designed around extended RNA secondary structures.
Now with some filtering and manipulation options.
|Versions||0.1.0.0, 0.1.1.0, 0.1.2.0, 0.1.2.2, 0.1.2.3|
|Dependencies||base (>3 && <5), BiobaseDotP, BiobaseFR3D, BiobaseXNA (>=0.5.0.1), bytestring, cmdargs (==0.7.*), either-unwrap, iteratee, vector [details]|
|Copyright||Christian Hoener zu Siederdissen, 2011|
|Author||Christian Hoener zu Siederdissen|
|Uploaded||Thu Sep 1 09:09:07 UTC 2011 by ChristianHoener|
|Downloads||1480 total (16 in the last 30 days)|
|Status||Docs uploaded by user
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