name:           BiobaseTrainingData
version:        0.1.2.3
author:         Christian Hoener zu Siederdissen
maintainer:     choener@tbi.univie.ac.at
homepage:       http://www.tbi.univie.ac.at/~choener/
copyright:      Christian Hoener zu Siederdissen, 2011
category:       Bioinformatics
synopsis:       RNA folding training data
license:        GPL-3
license-file:   LICENSE
build-type:     Simple
stability:      experimental
cabal-version:  >= 1.6.0
description:
                Parameter training for RNA secondary structure prediction tools
                requires data to train on. Since there are a number of
                different available formats, and handling them all in the
                training tools is a pain, we have this library and programs.
                "MkTrainingData" transforms different formats and they all
                produce a common "training data" format. This format is
                Haskell-readable (and only partially human-readable)
                line-by-line. Generating additional training data is therefor
                easy as one can just "cat" together different training files.
                .
                Note that several features are designed around /extended/ RNA
                secondary structures.
                .
                Now with some filtering and manipulation options.

library
  build-depends:
    base >3 && <5,
    bytestring,
    either-unwrap,
    iteratee,
    vector,
    BiobaseDotP,
    BiobaseFR3D,
    BiobaseXNA >= 0.5.0.1

  exposed-modules:
    Biobase.TrainingData
    Biobase.TrainingData.Filter
    Biobase.TrainingData.Import
    Biobase.TrainingData.Manip

  ghc-options:
    -O2

executable MkTrainingData
  build-depends:
    cmdargs == 0.8.*
  main-is:
    MkTrainingData.hs
  ghc-options:
    -O2