+. | Biobase.Types.Index |
-. | Biobase.Types.Index |
AAseq | |
1 (Type/Class) | Biobase.Types.AminoAcidSequence |
2 (Data Constructor) | Biobase.Types.AminoAcidSequence |
aaseq | Biobase.Types.AminoAcidSequence |
Accession | |
1 (Type/Class) | Biobase.Types.Accession |
2 (Data Constructor) | Biobase.Types.Accession |
accession | |
1 (Function) | Biobase.Types.Accession |
2 (Function) | Biobase.Types.Taxonomy |
accession' | Biobase.Types.Accession |
Bitscore | |
1 (Type/Class) | Biobase.Types.Bitscore |
2 (Data Constructor) | Biobase.Types.Bitscore |
checkIndex | Biobase.Types.Index |
Clan | |
1 (Type/Class) | Biobase.Types.Accession |
2 (Data Constructor) | Biobase.Types.Accession |
Class | Biobase.Types.Taxonomy |
Classification | Biobase.Types.Taxonomy |
classification | Biobase.Types.Taxonomy |
compactifySPForest | Biobase.Types.Structure |
Complement | Biobase.Types.NucleotideSequence |
complement | Biobase.Types.NucleotideSequence |
DDG | |
1 (Type/Class) | Biobase.Types.Energy |
2 (Data Constructor) | Biobase.Types.Energy |
dDG | Biobase.Types.Energy |
delta | Biobase.Types.Index |
DG | |
1 (Type/Class) | Biobase.Types.Energy |
2 (Data Constructor) | Biobase.Types.Energy |
dG | Biobase.Types.Energy |
dna2rna | Biobase.Types.NucleotideSequence |
dnaComplement | Biobase.Types.NucleotideSequence |
DNAseq | |
1 (Type/Class) | Biobase.Types.NucleotideSequence |
2 (Data Constructor) | Biobase.Types.NucleotideSequence |
dnaseq | Biobase.Types.NucleotideSequence |
Evalue | |
1 (Type/Class) | Biobase.Types.Evalue |
2 (Data Constructor) | Biobase.Types.Evalue |
Family | Biobase.Types.Taxonomy |
fromIndex | Biobase.Types.ReadingFrame |
fromInt0 | Biobase.Types.Index |
generateShape | Biobase.Types.Shape |
Genus | Biobase.Types.Taxonomy |
getBitscore | Biobase.Types.Bitscore |
getEvalue | Biobase.Types.Evalue |
getIndex | Biobase.Types.Index.Type, Biobase.Types.Index |
getReadingFrame | Biobase.Types.ReadingFrame |
getSpeciesNameRep | Biobase.Types.Names |
getStrand | Biobase.Types.Strand |
getTaxonomicRank | Biobase.Types.Names |
guessAccessionType | Biobase.Types.Accession |
I0 | Biobase.Types.Index |
I1 | Biobase.Types.Index |
Index | |
1 (Type/Class) | Biobase.Types.Index.Type, Biobase.Types.Index |
2 (Data Constructor) | Biobase.Types.Index.Type |
index | Biobase.Types.Index.Type, Biobase.Types.Index |
Kingdom | Biobase.Types.Taxonomy |
LimitType | Biobase.Types.Index.Type, Biobase.Types.Strand |
LtIndex | Biobase.Types.Index.Type |
LtStrand | Biobase.Types.Strand |
maybeIndex | Biobase.Types.Index.Type, Biobase.Types.Index |
MinusStrand | Biobase.Types.Strand |
mkAAseq | Biobase.Types.AminoAcidSequence |
mkDNAseq | Biobase.Types.NucleotideSequence |
mkRNAds | Biobase.Types.Structure |
mkRNAseq | Biobase.Types.NucleotideSequence |
MVector | Biobase.Types.Bitscore, Biobase.Types.Energy, Biobase.Types.Evalue, Biobase.Types.Index.Type, Biobase.Types.Names, Biobase.Types.Strand, Biobase.Types.Taxonomy |
MV_Bitscore | Biobase.Types.Bitscore |
MV_Classification | Biobase.Types.Taxonomy |
MV_DDG | Biobase.Types.Energy |
MV_DG | Biobase.Types.Energy |
MV_Evalue | Biobase.Types.Evalue |
MV_Index | Biobase.Types.Index.Type |
MV_SpeciesName | Biobase.Types.Names |
MV_Strand | Biobase.Types.Strand |
nextReadingFrame | Biobase.Types.ReadingFrame |
Nucleotide | |
1 (Type/Class) | Biobase.Types.Accession |
2 (Data Constructor) | Biobase.Types.Accession |
Order | Biobase.Types.Taxonomy |
pairDist | Biobase.Types.Structure |
Pfam | |
1 (Type/Class) | Biobase.Types.Accession |
2 (Data Constructor) | Biobase.Types.Accession |
Phylum | Biobase.Types.Taxonomy |
PlusStrand | Biobase.Types.Strand |
prevReadingFrame | Biobase.Types.ReadingFrame |
prob2Score | Biobase.Types.Bitscore |
Protein | |
1 (Type/Class) | Biobase.Types.Accession |
2 (Data Constructor) | Biobase.Types.Accession |
ReadingFrame | |
1 (Type/Class) | Biobase.Types.ReadingFrame |
2 (Data Constructor) | Biobase.Types.ReadingFrame |
reIndex | Biobase.Types.Index |
retagAccession | Biobase.Types.Accession |
Rfam | |
1 (Type/Class) | Biobase.Types.Accession |
2 (Data Constructor) | Biobase.Types.Accession |
rna2dna | Biobase.Types.NucleotideSequence |
rnaComplement | Biobase.Types.NucleotideSequence |
RNAds | |
1 (Type/Class) | Biobase.Types.Structure |
2 (Data Constructor) | Biobase.Types.Structure |
rnads | Biobase.Types.Structure |
rnads2rnassPair | Biobase.Types.Structure |
rnadsL | Biobase.Types.Structure |
rnadsR | Biobase.Types.Structure |
RNAensembleStructure | Biobase.Types.Structure |
RNAes | Biobase.Types.Structure |
rnaes | Biobase.Types.Structure |
RNApset | |
1 (Type/Class) | Biobase.Types.Structure |
2 (Data Constructor) | Biobase.Types.Structure |
rnapset | Biobase.Types.Structure |
rnapsetRNAss | Biobase.Types.Structure |
rnapsetSLen | Biobase.Types.Structure |
RNAseq | |
1 (Type/Class) | Biobase.Types.NucleotideSequence |
2 (Data Constructor) | Biobase.Types.NucleotideSequence |
rnaseq | Biobase.Types.NucleotideSequence |
RNAshape | |
1 (Type/Class) | Biobase.Types.Shape |
2 (Data Constructor) | Biobase.Types.Shape |
rnashape | Biobase.Types.Shape |
rnashapelevel | Biobase.Types.Shape |
rnashapePairSet | Biobase.Types.Shape |
RNAshapepset | |
1 (Type/Class) | Biobase.Types.Shape |
2 (Data Constructor) | Biobase.Types.Shape |
rnashapepset | Biobase.Types.Shape |
rnashapepsetlevel | Biobase.Types.Shape |
RNAss | |
1 (Type/Class) | Biobase.Types.Structure |
2 (Data Constructor) | Biobase.Types.Structure |
rnass | Biobase.Types.Structure |
rnass2shape | Biobase.Types.Shape |
rnassPairSet | Biobase.Types.Structure |
rnassPairSet' | |
1 (Function) | Biobase.Types.Structure |
2 (Function) | Biobase.Types.Shape |
rnassSPForest | Biobase.Types.Structure |
RNAStructureError | |
1 (Type/Class) | Biobase.Types.Structure |
2 (Data Constructor) | Biobase.Types.Structure |
score2Prob | Biobase.Types.Bitscore |
SequenceID | |
1 (Type/Class) | Biobase.Types.NucleotideSequence |
2 (Data Constructor) | Biobase.Types.NucleotideSequence |
sequenceID | Biobase.Types.NucleotideSequence |
sequenceIDstring | Biobase.Types.NucleotideSequence |
shapeForest | Biobase.Types.Shape |
shapeForestshape | Biobase.Types.Shape |
ShapeLevel | Biobase.Types.Shape |
shapePairDist | Biobase.Types.Shape |
SL1 | Biobase.Types.Shape |
SL2 | Biobase.Types.Shape |
SL3 | Biobase.Types.Shape |
SL4 | Biobase.Types.Shape |
SL5 | Biobase.Types.Shape |
Species | |
1 (Type/Class) | Biobase.Types.Accession |
2 (Data Constructor) | Biobase.Types.Accession |
3 (Data Constructor) | Biobase.Types.Taxonomy |
species | Biobase.Types.Taxonomy |
SpeciesName | |
1 (Type/Class) | Biobase.Types.Names |
2 (Data Constructor) | Biobase.Types.Names |
speciesName | Biobase.Types.Names |
speciesNameBimap | Biobase.Types.Names.Internal |
speciesNameBimapAdd | Biobase.Types.Names.Internal |
speciesNameBimapLookupInt | Biobase.Types.Names.Internal |
Strand | |
1 (Type/Class) | Biobase.Types.Strand |
2 (Data Constructor) | Biobase.Types.Strand |
SubOrder | Biobase.Types.Taxonomy |
Taxon | |
1 (Type/Class) | Biobase.Types.Taxonomy |
2 (Data Constructor) | Biobase.Types.Taxonomy |
TaxonomicRank | |
1 (Type/Class) | Biobase.Types.Names |
2 (Data Constructor) | Biobase.Types.Names |
test | Biobase.Types.Shape |
toInt | Biobase.Types.Index |
toInt0 | Biobase.Types.Index |
Transcribe | Biobase.Types.NucleotideSequence |
transcribe | Biobase.Types.NucleotideSequence |
TranscribeTo | Biobase.Types.NucleotideSequence |
Unknown | Biobase.Types.Taxonomy |
unsafeMinus | Biobase.Types.Index |
unsafePlus | Biobase.Types.Index |
Vector | Biobase.Types.Bitscore, Biobase.Types.Energy, Biobase.Types.Evalue, Biobase.Types.Index.Type, Biobase.Types.Names, Biobase.Types.Strand, Biobase.Types.Taxonomy |
verifyRNAss | Biobase.Types.Structure |
V_Bitscore | Biobase.Types.Bitscore |
V_Classification | Biobase.Types.Taxonomy |
V_DDG | Biobase.Types.Energy |
V_DG | Biobase.Types.Energy |
V_Evalue | Biobase.Types.Evalue |
V_Index | Biobase.Types.Index.Type |
V_SpeciesName | Biobase.Types.Names |
V_Strand | Biobase.Types.Strand |
_aaseq | Biobase.Types.AminoAcidSequence |
_dnaseq | Biobase.Types.NucleotideSequence |
_getAccession | Biobase.Types.Accession |
_rnadsL | Biobase.Types.Structure |
_rnadsR | Biobase.Types.Structure |
_rnaes | Biobase.Types.Structure |
_rnaOffender | Biobase.Types.Structure |
_rnapset | Biobase.Types.Structure |
_rnapsetSLen | Biobase.Types.Structure |
_rnaseq | Biobase.Types.NucleotideSequence |
_rnashape | Biobase.Types.Shape |
_rnashapelevel | Biobase.Types.Shape |
_rnashapepset | Biobase.Types.Shape |
_rnashapepsetlevel | Biobase.Types.Shape |
_rnass | Biobase.Types.Structure |
_rnaStructureError | Biobase.Types.Structure |
_sequenceID | Biobase.Types.NucleotideSequence |