BiobaseTypes-0.1.4.0: Collection of types for bioinformatics

Index

+.Biobase.Types.Index
-.Biobase.Types.Index
AAseq 
1 (Type/Class)Biobase.Types.AminoAcidSequence
2 (Data Constructor)Biobase.Types.AminoAcidSequence
aaseqBiobase.Types.AminoAcidSequence
Accession 
1 (Type/Class)Biobase.Types.Accession
2 (Data Constructor)Biobase.Types.Accession
accession 
1 (Function)Biobase.Types.Accession
2 (Function)Biobase.Types.Taxonomy
accession'Biobase.Types.Accession
Bitscore 
1 (Type/Class)Biobase.Types.Bitscore
2 (Data Constructor)Biobase.Types.Bitscore
checkIndexBiobase.Types.Index
Clan 
1 (Type/Class)Biobase.Types.Accession
2 (Data Constructor)Biobase.Types.Accession
ClassBiobase.Types.Taxonomy
ClassificationBiobase.Types.Taxonomy
classificationBiobase.Types.Taxonomy
compactifySPForestBiobase.Types.Structure
ComplementBiobase.Types.NucleotideSequence
complementBiobase.Types.NucleotideSequence
DDG 
1 (Type/Class)Biobase.Types.Energy
2 (Data Constructor)Biobase.Types.Energy
dDGBiobase.Types.Energy
deltaBiobase.Types.Index
DG 
1 (Type/Class)Biobase.Types.Energy
2 (Data Constructor)Biobase.Types.Energy
dGBiobase.Types.Energy
dna2rnaBiobase.Types.NucleotideSequence
dnaComplementBiobase.Types.NucleotideSequence
DNAseq 
1 (Type/Class)Biobase.Types.NucleotideSequence
2 (Data Constructor)Biobase.Types.NucleotideSequence
dnaseqBiobase.Types.NucleotideSequence
Evalue 
1 (Type/Class)Biobase.Types.Evalue
2 (Data Constructor)Biobase.Types.Evalue
FamilyBiobase.Types.Taxonomy
fromIndexBiobase.Types.ReadingFrame
fromInt0Biobase.Types.Index
generateShapeBiobase.Types.Shape
GenusBiobase.Types.Taxonomy
getBitscoreBiobase.Types.Bitscore
getEvalueBiobase.Types.Evalue
getIndexBiobase.Types.Index.Type, Biobase.Types.Index
getReadingFrameBiobase.Types.ReadingFrame
getSpeciesNameRepBiobase.Types.Names
getStrandBiobase.Types.Strand
getTaxonomicRankBiobase.Types.Names
guessAccessionTypeBiobase.Types.Accession
I0Biobase.Types.Index
I1Biobase.Types.Index
Index 
1 (Type/Class)Biobase.Types.Index.Type, Biobase.Types.Index
2 (Data Constructor)Biobase.Types.Index.Type
indexBiobase.Types.Index.Type, Biobase.Types.Index
KingdomBiobase.Types.Taxonomy
LimitTypeBiobase.Types.Index.Type, Biobase.Types.Strand
LtIndexBiobase.Types.Index.Type
LtStrandBiobase.Types.Strand
maybeIndexBiobase.Types.Index.Type, Biobase.Types.Index
MinusStrandBiobase.Types.Strand
mkAAseqBiobase.Types.AminoAcidSequence
mkDNAseqBiobase.Types.NucleotideSequence
mkRNAdsBiobase.Types.Structure
mkRNAseqBiobase.Types.NucleotideSequence
MVectorBiobase.Types.Bitscore, Biobase.Types.Energy, Biobase.Types.Evalue, Biobase.Types.Index.Type, Biobase.Types.Names, Biobase.Types.Strand, Biobase.Types.Taxonomy
MV_BitscoreBiobase.Types.Bitscore
MV_ClassificationBiobase.Types.Taxonomy
MV_DDGBiobase.Types.Energy
MV_DGBiobase.Types.Energy
MV_EvalueBiobase.Types.Evalue
MV_IndexBiobase.Types.Index.Type
MV_SpeciesNameBiobase.Types.Names
MV_StrandBiobase.Types.Strand
nextReadingFrameBiobase.Types.ReadingFrame
Nucleotide 
1 (Type/Class)Biobase.Types.Accession
2 (Data Constructor)Biobase.Types.Accession
OrderBiobase.Types.Taxonomy
pairDistBiobase.Types.Structure
Pfam 
1 (Type/Class)Biobase.Types.Accession
2 (Data Constructor)Biobase.Types.Accession
PhylumBiobase.Types.Taxonomy
PlusStrandBiobase.Types.Strand
prevReadingFrameBiobase.Types.ReadingFrame
prob2ScoreBiobase.Types.Bitscore
Protein 
1 (Type/Class)Biobase.Types.Accession
2 (Data Constructor)Biobase.Types.Accession
ReadingFrame 
1 (Type/Class)Biobase.Types.ReadingFrame
2 (Data Constructor)Biobase.Types.ReadingFrame
reIndexBiobase.Types.Index
retagAccessionBiobase.Types.Accession
Rfam 
1 (Type/Class)Biobase.Types.Accession
2 (Data Constructor)Biobase.Types.Accession
rna2dnaBiobase.Types.NucleotideSequence
rnaComplementBiobase.Types.NucleotideSequence
RNAds 
1 (Type/Class)Biobase.Types.Structure
2 (Data Constructor)Biobase.Types.Structure
rnadsBiobase.Types.Structure
rnads2rnassPairBiobase.Types.Structure
rnadsLBiobase.Types.Structure
rnadsRBiobase.Types.Structure
RNAensembleStructureBiobase.Types.Structure
RNAesBiobase.Types.Structure
rnaesBiobase.Types.Structure
RNApset 
1 (Type/Class)Biobase.Types.Structure
2 (Data Constructor)Biobase.Types.Structure
rnapsetBiobase.Types.Structure
rnapsetRNAssBiobase.Types.Structure
rnapsetSLenBiobase.Types.Structure
RNAseq 
1 (Type/Class)Biobase.Types.NucleotideSequence
2 (Data Constructor)Biobase.Types.NucleotideSequence
rnaseqBiobase.Types.NucleotideSequence
RNAshape 
1 (Type/Class)Biobase.Types.Shape
2 (Data Constructor)Biobase.Types.Shape
rnashapeBiobase.Types.Shape
rnashapelevelBiobase.Types.Shape
rnashapePairSetBiobase.Types.Shape
RNAshapepset 
1 (Type/Class)Biobase.Types.Shape
2 (Data Constructor)Biobase.Types.Shape
rnashapepsetBiobase.Types.Shape
rnashapepsetlevelBiobase.Types.Shape
RNAss 
1 (Type/Class)Biobase.Types.Structure
2 (Data Constructor)Biobase.Types.Structure
rnassBiobase.Types.Structure
rnass2shapeBiobase.Types.Shape
rnassPairSetBiobase.Types.Structure
rnassPairSet' 
1 (Function)Biobase.Types.Structure
2 (Function)Biobase.Types.Shape
rnassSPForestBiobase.Types.Structure
RNAStructureError 
1 (Type/Class)Biobase.Types.Structure
2 (Data Constructor)Biobase.Types.Structure
score2ProbBiobase.Types.Bitscore
SequenceID 
1 (Type/Class)Biobase.Types.NucleotideSequence
2 (Data Constructor)Biobase.Types.NucleotideSequence
sequenceIDBiobase.Types.NucleotideSequence
sequenceIDstringBiobase.Types.NucleotideSequence
shapeForestBiobase.Types.Shape
shapeForestshapeBiobase.Types.Shape
ShapeLevelBiobase.Types.Shape
shapePairDistBiobase.Types.Shape
SL1Biobase.Types.Shape
SL2Biobase.Types.Shape
SL3Biobase.Types.Shape
SL4Biobase.Types.Shape
SL5Biobase.Types.Shape
Species 
1 (Type/Class)Biobase.Types.Accession
2 (Data Constructor)Biobase.Types.Accession
3 (Data Constructor)Biobase.Types.Taxonomy
speciesBiobase.Types.Taxonomy
SpeciesName 
1 (Type/Class)Biobase.Types.Names
2 (Data Constructor)Biobase.Types.Names
speciesNameBiobase.Types.Names
speciesNameBimapBiobase.Types.Names.Internal
speciesNameBimapAddBiobase.Types.Names.Internal
speciesNameBimapLookupIntBiobase.Types.Names.Internal
Strand 
1 (Type/Class)Biobase.Types.Strand
2 (Data Constructor)Biobase.Types.Strand
SubOrderBiobase.Types.Taxonomy
Taxon 
1 (Type/Class)Biobase.Types.Taxonomy
2 (Data Constructor)Biobase.Types.Taxonomy
TaxonomicRank 
1 (Type/Class)Biobase.Types.Names
2 (Data Constructor)Biobase.Types.Names
testBiobase.Types.Shape
toIntBiobase.Types.Index
toInt0Biobase.Types.Index
TranscribeBiobase.Types.NucleotideSequence
transcribeBiobase.Types.NucleotideSequence
TranscribeToBiobase.Types.NucleotideSequence
UnknownBiobase.Types.Taxonomy
unsafeMinusBiobase.Types.Index
unsafePlusBiobase.Types.Index
VectorBiobase.Types.Bitscore, Biobase.Types.Energy, Biobase.Types.Evalue, Biobase.Types.Index.Type, Biobase.Types.Names, Biobase.Types.Strand, Biobase.Types.Taxonomy
verifyRNAssBiobase.Types.Structure
V_BitscoreBiobase.Types.Bitscore
V_ClassificationBiobase.Types.Taxonomy
V_DDGBiobase.Types.Energy
V_DGBiobase.Types.Energy
V_EvalueBiobase.Types.Evalue
V_IndexBiobase.Types.Index.Type
V_SpeciesNameBiobase.Types.Names
V_StrandBiobase.Types.Strand
_aaseqBiobase.Types.AminoAcidSequence
_dnaseqBiobase.Types.NucleotideSequence
_getAccessionBiobase.Types.Accession
_rnadsLBiobase.Types.Structure
_rnadsRBiobase.Types.Structure
_rnaesBiobase.Types.Structure
_rnaOffenderBiobase.Types.Structure
_rnapsetBiobase.Types.Structure
_rnapsetSLenBiobase.Types.Structure
_rnaseqBiobase.Types.NucleotideSequence
_rnashapeBiobase.Types.Shape
_rnashapelevelBiobase.Types.Shape
_rnashapepsetBiobase.Types.Shape
_rnashapepsetlevelBiobase.Types.Shape
_rnassBiobase.Types.Structure
_rnaStructureErrorBiobase.Types.Structure
_sequenceIDBiobase.Types.NucleotideSequence