Safe Haskell	None
Language	Haskell2010

Biobase.Secondary.Convert

Contents

(RNA,RNA) - Basepair
(RNA,RNA) - ViennaPair
Basepair - ViennaPair

Description

This module gives functionality to convert between different variants of secondary structure elements.

Synopsis

class BasepairConvert a b where
- basepairConvert :: a -> b

Documentation

class BasepairConvert a b where Source #

basepairConvert converts between different secondary structure base pair representations. In general, the conversion is lossy, in particular when "downsizing", say to ViennaPair.

Methods

basepairConvert :: a -> b Source #

Instances

Instances details

BasepairConvert Basepair ViennaPair Source #
Instance details Defined in Biobase.Secondary.Convert Methods basepairConvert :: Basepair -> ViennaPair Source #
BasepairConvert ViennaPair Basepair Source #
Instance details Defined in Biobase.Secondary.Convert Methods basepairConvert :: ViennaPair -> Basepair Source #
BasepairConvert Basepair (Letter RNA n, Letter RNA n) Source #
Instance details Defined in Biobase.Secondary.Convert Methods basepairConvert :: Basepair -> (Letter RNA n, Letter RNA n) Source #
BasepairConvert ViennaPair (Letter RNA n, Letter RNA n) Source #
Instance details Defined in Biobase.Secondary.Convert Methods basepairConvert :: ViennaPair -> (Letter RNA n, Letter RNA n) Source #
BasepairConvert (Letter RNA n, Letter RNA n) ViennaPair Source #
Instance details Defined in Biobase.Secondary.Convert Methods basepairConvert :: (Letter RNA n, Letter RNA n) -> ViennaPair Source #
BasepairConvert (Letter RNA n, Letter RNA n) Basepair Source #
Instance details Defined in Biobase.Secondary.Convert Methods basepairConvert :: (Letter RNA n, Letter RNA n) -> Basepair Source #

Documentation

Instances

`(RNA,RNA) - Basepair`

`(RNA,RNA) - ViennaPair`

`Basepair - ViennaPair`