acgt | Biobase.Primary |
acgu | Biobase.Primary |
antiCT | Biobase.Secondary |
baseL | Biobase.Secondary |
baseP | Biobase.Secondary |
baseR | Biobase.Secondary |
BaseSelect | Biobase.Secondary |
baseT | Biobase.Secondary |
bonusCC | Biobase.Secondary.Constraint |
bonusTable | Biobase.Secondary.Constraint |
Bounds | Biobase.Primary.Bounds |
cgnsP | Biobase.Secondary.Vienna |
cguaP | Biobase.Secondary.Vienna |
charCTList | Biobase.Secondary |
charEdgeList | Biobase.Secondary |
charNucList | Biobase.Primary |
cHH | Biobase.Secondary |
cHS | Biobase.Secondary |
cHW | Biobase.Secondary |
cis | Biobase.Secondary |
Constraint | |
1 (Type/Class) | Biobase.Secondary.Constraint |
2 (Data Constructor) | Biobase.Secondary.Constraint |
cSH | Biobase.Secondary |
cSS | Biobase.Secondary |
cSW | Biobase.Secondary |
CT | Biobase.Secondary |
ctCharList | Biobase.Secondary |
CTisomerism | Biobase.Secondary |
cWH | Biobase.Secondary |
cWS | Biobase.Secondary |
cWW | Biobase.Secondary |
D1S | Biobase.Secondary.Diagrams |
D1Secondary | Biobase.Secondary.Diagrams |
d1sTree | Biobase.Secondary.Diagrams |
d2Compare | Biobase.Secondary.Diagrams |
d2Grouping | Biobase.Secondary.Diagrams |
D2S | Biobase.Secondary.Diagrams |
D2Secondary | Biobase.Secondary.Diagrams |
d2sTree | Biobase.Secondary.Diagrams |
defaultIsostericityMap | Biobase.Secondary.Isostericity |
detailedCSV | Biobase.Secondary.Isostericity |
dotBracket | Biobase.Secondary.Diagrams |
Edge | |
1 (Type/Class) | Biobase.Secondary |
2 (Data Constructor) | Biobase.Secondary |
edgeCharList | Biobase.Secondary |
edgeUndefined | Biobase.Secondary |
ExtPair | Biobase.Secondary |
ExtPairAnnotation | Biobase.Secondary |
ExtPairIdx | Biobase.Secondary |
fromD1S | Biobase.Secondary.Diagrams |
fromD2S | Biobase.Secondary.Diagrams |
fromNuc | Biobase.Primary |
fromViennaPair | Biobase.Secondary.Vienna |
getClasses | Biobase.Secondary.Isostericity |
HashedPrimary | |
1 (Type/Class) | Biobase.Primary.Hashed |
2 (Data Constructor) | Biobase.Primary.Hashed |
hoogsteen | Biobase.Secondary |
inClass | Biobase.Secondary.Isostericity |
IsostericityLookup | Biobase.Secondary.Isostericity |
maxExtended | Biobase.Primary.Bounds |
maxNormal | Biobase.Primary.Bounds |
minExtended | Biobase.Primary.Bounds |
minNormal | Biobase.Primary.Bounds |
MkConstraint | Biobase.Secondary.Constraint |
mkConstraint | Biobase.Secondary.Constraint |
mkD1S | Biobase.Secondary.Diagrams |
MkD1Secondary | Biobase.Secondary.Diagrams |
mkD2S | Biobase.Secondary.Diagrams |
MkD2Secondary | Biobase.Secondary.Diagrams |
mkHashedPrimary | Biobase.Primary.Hashed |
mkIsostericityList | Biobase.Secondary.Isostericity |
mkIsostericityMap | Biobase.Secondary.Isostericity |
mkNuc | Biobase.Primary |
MkPrimary | Biobase.Primary |
mkPrimary | Biobase.Primary |
MkViennaPair | Biobase.Secondary.Vienna |
mkViennaPair | Biobase.Secondary.Vienna |
nA | Biobase.Primary |
nacgt | Biobase.Primary |
nacgu | Biobase.Primary |
nC | Biobase.Primary |
nG | Biobase.Primary |
nIMI | Biobase.Primary |
nN | Biobase.Primary |
nobonusCC | Biobase.Secondary.Constraint |
nT | Biobase.Primary |
nU | Biobase.Primary |
Nuc | |
1 (Type/Class) | Biobase.Primary |
2 (Data Constructor) | Biobase.Primary |
nucCharList | Biobase.Primary |
nUndefined | Biobase.Primary |
Pair | Biobase.Secondary |
PairIdx | Biobase.Secondary |
pairToString | Biobase.Secondary.Vienna |
paraCT | Biobase.Secondary |
parsedCSV | Biobase.Secondary.Isostericity |
Primary | Biobase.Primary |
removeByCounting | Biobase.Secondary.PseudoKnots |
RemovePseudoKnots | Biobase.Secondary.PseudoKnots |
revPair | Biobase.Secondary.Vienna |
SSExt | Biobase.Secondary.Diagrams |
SSTree | |
1 (Type/Class) | Biobase.Secondary.Diagrams |
2 (Data Constructor) | Biobase.Secondary.Diagrams |
sugar | Biobase.Secondary |
test | Biobase.Secondary.Diagrams |
test' | Biobase.Secondary.Diagrams |
tHH | Biobase.Secondary |
threeChar | Biobase.Secondary |
tHS | Biobase.Secondary |
tHW | Biobase.Secondary |
trans | Biobase.Secondary |
tSH | Biobase.Secondary |
tSS | Biobase.Secondary |
tSW | Biobase.Secondary |
tWH | Biobase.Secondary |
tWS | Biobase.Secondary |
tWW | Biobase.Secondary |
unConstraint | Biobase.Secondary.Constraint |
unCT | Biobase.Secondary |
unD1S | Biobase.Secondary.Diagrams |
unD2S | Biobase.Secondary.Diagrams |
undefinedCT | Biobase.Secondary |
unEdge | Biobase.Secondary |
unknownCT | Biobase.Secondary |
unknownEdge | Biobase.Secondary |
unNuc | Biobase.Primary |
updL | Biobase.Secondary |
updP | Biobase.Secondary |
updR | Biobase.Secondary |
updT | Biobase.Secondary |
ViennaPair | |
1 (Type/Class) | Biobase.Secondary.Vienna |
2 (Data Constructor) | Biobase.Secondary.Vienna |
vpAU | Biobase.Secondary.Vienna |
vpCG | Biobase.Secondary.Vienna |
vpGC | Biobase.Secondary.Vienna |
vpGU | Biobase.Secondary.Vienna |
vpNP | Biobase.Secondary.Vienna |
vpNS | Biobase.Secondary.Vienna |
vpUA | Biobase.Secondary.Vienna |
vpUG | Biobase.Secondary.Vienna |
vpUndefined | Biobase.Secondary.Vienna |
wc | Biobase.Secondary |