name: BiobaseXNA version: 0.8.2.0 author: Christian Hoener zu Siederdissen maintainer: choener@tbi.univie.ac.at homepage: http://www.tbi.univie.ac.at/~choener/ copyright: Christian Hoener zu Siederdissen, 2011-2013 category: Bioinformatics synopsis: Efficient RNA/DNA representations license: GPL-3 license-file: LICENSE build-type: Simple stability: experimental cabal-version: >= 1.6.0 description: This is a base library for bioinformatics with emphasis on RNA and DNA primary structure as well as amino acid sequences. . Provided are efficient encodings for short sequences, as required by RNA folding tools. Extended RNA secondary structures can be represented as well. . Contains data from: . @ Frequency and isostericity of RNA base pairs Jesse Stombaugh, Craig L. Zirbel, Eric Westhof, and Neocles B. Leontis Nucl. Acids Res. (2009) @ . extra-source-files: sources/isostericity-matrices.csv sources/isostericity-detailed.csv sources/iupac-nucleotides changelog library build-depends: base >3 && <5, bytestring >= 0.10 , containers >= 0.4 , csv >= 0.1.2 , file-embed >= 0.0.4.7 , mtl >= 2.1 , primitive >= 0.5 , PrimitiveArray >= 0.5.4 , repa >= 3.2 , text >= 0.11 , tuple >= 0.2 , vector >= 0.10 exposed-modules: Biobase.AAseq Biobase.Primary Biobase.Primary.Bounds Biobase.Primary.Hashed Biobase.Primary.IUPAC Biobase.Secondary Biobase.Secondary.Constraint Biobase.Secondary.Diagrams Biobase.Secondary.Isostericity Biobase.Secondary.PseudoKnots Biobase.Secondary.Vienna ghc-options: -O2 -funbox-strict-fields executable SubOptDistance build-depends: cmdargs >= 0.10 main-is: SubOptDistance.hs ghc-options: -O2 source-repository head type: git location: git://github.com/choener/BiobaseXNA