BiobaseXNA: Efficient RNA/DNA representations

[ bioinformatics, gpl, library, program ] [ Propose Tags ]

This is a base library for bioinformatics with emphasis on RNA and DNA primary structure as well as amino acid sequences.

Provided are efficient encodings for short sequences, as required by RNA folding tools. Extended RNA secondary structures can be represented as well.

Contains data from:

Frequency and isostericity of RNA base pairs
Jesse Stombaugh, Craig L. Zirbel, Eric Westhof, and Neocles B. Leontis
Nucl. Acids Res. (2009)

Versions [faq],,,,,,,,,,,,,,,,,,,,,,,,,,,,,, (info)
Change log
Dependencies aeson (==0.8.*), base (>=4.7 && <4.9), bimaps (==0.0.0.*), binary (==0.7.*), BiobaseXNA, bytes (==0.15.*), bytestring (==0.10.*), cereal (==0.4.*), cereal-vector (==0.2.*), cmdargs (==0.10.*), containers (==0.5.*), csv (==0.1.*), file-embed (==0.0.8.*), hashable (==1.2.*), lens (==4.*), primitive (>=0.5 && <0.7), PrimitiveArray (==0.6.*), split (==0.2.*), text (==1.*), tuple (==0.3.*), vector (==0.10.*), vector-binary-instances (==0.2.*), vector-th-unbox (==0.2.*) [details]
License GPL-3.0-only
Copyright Christian Hoener zu Siederdissen, 2011 - 2015
Author Christian Hoener zu Siederdissen
Category Bioinformatics
Home page
Source repo head: git clone git://
Uploaded by ChristianHoener at Fri May 8 12:11:12 UTC 2015
Distributions NixOS:
Executables SubOptDistance
Downloads 16331 total (384 in the last 30 days)
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Status Hackage Matrix CI
Docs available [build log]
Last success reported on 2015-05-08 [all 1 reports]




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