BiobaseXNA-0.9.2.1: Efficient RNA/DNA representations

Safe HaskellNone
LanguageHaskell2010

Biobase.Primary.Nuc.RNA

Synopsis

Documentation

data RNA Source

RNA nucleotides.

Instances

IsostericityLookup ExtPair Source

For extended basepairs, we take the default mapping and go from there.

TODO inClass missing

IsostericityLookup Pair Source

Normal basepairs are assumed to have cWW basepairing.

TODO inClass missing

Bounded (Letter RNA) Source 
Enum (Letter RNA) Source 
Read (Letter RNA) Source 
Show (Letter RNA) Source 
IsString [Letter RNA] Source 
Degenerate (Letter RNA) Source 
MkPrimary (Vector Char) RNA Source 
Complement (Letter RNA) (Letter RNA) Source 
Complement (Letter RNA) (Letter DNA) Source 
Complement (Letter DNA) (Letter RNA) Source 
MkViennaPair (Letter RNA, Letter RNA) Source 

pattern A :: Letter RNA Source

pattern C :: Letter RNA Source

pattern G :: Letter RNA Source

pattern U :: Letter RNA Source

pattern N :: Letter RNA Source