BlastHTTP: Libary to interface with the NCBI blast REST interface
Searches for a provided nucleotide or protein sequence with the NCBI Blast REST service and returns a blast result in xml format as BlastResult datatype.
For more information on BLAST refer to: http://blast.ncbi.nlm.nih.gov/Blast.cgi.
Information on the webservice can be found at: http://www.ncbi.nlm.nih.gov/BLAST/developer.shtml.
If you plan to submit more than 20 searches in one session, please look up the Usage Guidelines in the webservice information.
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| Versions [faq] | 0.0.1, 1.0.0, 1.0.1, 1.2.0, 1.2.1, 1.3.0 |
|---|---|
| Change log | changelog |
| Dependencies | base (>=4.5 && <5), biocore, biofasta, blastxml, bytestring, conduit, HTTP, http-conduit, hxt, mtl, network, transformers [details] |
| License | GPL-3.0-only |
| Author | Florian Eggenhofer |
| Maintainer | florian.eggenhofer@univie.ac.at |
| Revised | Revision 1 made by FlorianEggenhofer at Mon Apr 20 17:39:24 UTC 2015 |
| Category | Bioinformatics |
| Home page | https://github.com/eggzilla/BlastHTTP |
| Source repo | head: git clone https://github.com/eggzilla/BlastHTTP this: darcs get https://github.com/eggzilla/BlastHTTP/tree/1.2.0 --tag 1.2.0 |
| Uploaded | by FlorianEggenhofer at Mon Apr 20 17:30:45 UTC 2015 |
| Distributions | NixOS:1.3.0 |
| Downloads | 3450 total (80 in the last 30 days) |
| Rating | (no votes yet) [estimated by rule of succession] |
| Your Rating | |
| Status | Docs available [build log] Last success reported on 2015-04-20 [all 1 reports] |
Downloads
- BlastHTTP-1.2.0.tar.gz [browse] (Cabal source package)
- Package description (revised from the package)
Note: This package has metadata revisions in the cabal description newer than included in the tarball. To unpack the package including the revisions, use 'cabal get'.
Readme for BlastHTTP-1.2.0
[back to package description]BlastHTTP 
Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice
Changes:
Version 1.0.0:
Added optionalArgument parameter to BlastHTTP datatype and removed EntrezQuery. This has the advantage that any additional argument can be supplied, not only EntrezQuery strings.
Version 0.0.1:
Initial Version