BlastHTTP: Libary to interface with the NCBI blast REST interface

[ bioinformatics, gpl, library ] [ Propose Tags ]

Searches for a provided nucleotide or protein sequence with the NCBI Blast REST service and returns a blast result in xml format as BlastResult datatype.

For more information on BLAST refer to: http://blast.ncbi.nlm.nih.gov/Blast.cgi.

Information on the webservice can be found at: http://www.ncbi.nlm.nih.gov/BLAST/developer.shtml.

If you plan to submit more than 20 searches in one session, please look up the Usage Guidelines in the webservice information.


[Skip to Readme]
Versions [faq] 0.0.1, 1.0.0, 1.0.1, 1.2.0, 1.2.1, 1.3.0
Change log changelog
Dependencies base (>=4.5 && <5), biocore, biofasta, blastxml, bytestring, conduit, HTTP, http-conduit, hxt, mtl, network, transformers [details]
License GPL-3.0-only
Author Florian Eggenhofer
Maintainer florian.eggenhofer@univie.ac.at
Revised Revision 1 made by FlorianEggenhofer at Mon Apr 20 17:39:24 UTC 2015
Category Bioinformatics
Home page https://github.com/eggzilla/BlastHTTP
Source repo head: git clone https://github.com/eggzilla/BlastHTTP
this: darcs get https://github.com/eggzilla/BlastHTTP/tree/1.2.0 --tag 1.2.0
Uploaded by FlorianEggenhofer at Mon Apr 20 17:30:45 UTC 2015
Distributions NixOS:1.3.0
Downloads 3211 total (122 in the last 30 days)
Rating (no votes yet) [estimated by rule of succession]
Your Rating
  • λ
  • λ
  • λ
Status Hackage Matrix CI
Docs available [build log]
Last success reported on 2015-04-20 [all 1 reports]

Modules

[Index]

Downloads

Note: This package has metadata revisions in the cabal description newer than included in the tarball. To unpack the package including the revisions, use 'cabal get'.

Maintainer's Corner

For package maintainers and hackage trustees


Readme for BlastHTTP-1.2.0

[back to package description]

BlastHTTP Build Status

Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice

Changes:

Version 1.0.0:

Added optionalArgument parameter to BlastHTTP datatype and removed EntrezQuery. This has the advantage that any additional argument can be supplied, not only EntrezQuery strings.

Version 0.0.1:

Initial Version