The CMCompare package

[Tags:gpl, library, program]

Compares two Infernal covariance models. Returns the common MaxiMin score and the offending RNA sequence. High scores point toward low discriminative power of the two models. Based on:

Christian Höner zu Siederdissen, and Ivo L. Hofacker. 2010. Discriminatory power of RNA family models. Bioinformatics 26, no. 18: 453–59

http://bioinformatics.oxfordjournals.org/content/26/18/i453.long

Properties

Versions 0.0.1.1, 0.0.1.2, 0.0.1.4, 0.0.1.5
Dependencies array (>=0.4), base (==4.*), BiobaseInfernal (>=0.7.0.1), BiobaseXNA (>=0.6.3.1), cmdargs (>=0.10), containers (>=0.4), lens (==3.*) [details]
License GPL-3
Copyright Christian Hoener zu Siederdissen, Ivo L. Hofacker, 2010
Author Christian Hoener zu Siederdissen, Ivo L. Hofacker
Maintainer choener@tbi.univie.ac.at
Stability experimental
Category Bioinformatics
Home page http://www.tbi.univie.ac.at/software/cmcompare/
Uploaded Thu Nov 22 14:57:12 UTC 2012 by ChristianHoener
Distributions NixOS:0.0.1.5
Downloads 1202 total (12 in the last 30 days)
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Status Docs uploaded by user
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