ClustalParser [![Hackage](https://img.shields.io/hackage/v/ClustalParser.svg)](https://hackage.haskell.org/package/ClustalParser) [![Build Status](https://travis-ci.org/eggzilla/ClustalParser.svg)](https://travis-ci.org/eggzilla/ClustalParser)
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Currently contains parsers and datatypes for: clustalw2, clustalo, mlocarna, cmalign
Clustal tools are multiple sequence alignment tools for biological sequences
like DNA, RNA and Protein.
For more information on clustal Tools refer to .
Mlocarna is a multiple sequence alignment tool for RNA sequences with
secondary structure output.
For more information on mlocarna refer to .
cmalign is a multiple sequence alignment program based on RNA family models and produces
,among others, clustal output. It is part of infernal .
4 types of output are parsed
- Alignment file (.aln):
* Parsing with readClustalAlignment from filepath (Bio.ClustalParser)
* Parsing with parseClustalAlignment from String (Bio.ClustalParser)
- Alignment file with secondary structure (.aln):
* Parsing with readStructuralClustalAlignment from filepath (Bio.ClustalParser)
* Parsing with parsStructuralClustalAlignment from String (Bio.ClustalParser)
- Summary (printed to STDOUT):
* Parsing with readClustalSummary from filepath (Bio.ClustalParser)
* Parsing with parseClustalSummary from String (Bio.ClustalParser)
- Phylogenetic Tree (.dnd):
* Parsing with readGraphNewick from filepath (Bio.Phylogeny)
* Parsing with readGraphNewick from String (Bio.Phylogeny)