The Genbank package

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Haskell cabal Genbank libary contains tools, parser and datastructures for the NCBI (National Center for Biotechnology Information) Genbank format.

For more information on genbank refer to: http://www.ncbi.nlm.nih.gov/genbank/

For a sample genbank record see: http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html

Bio.GenbankData - Datastructures for Genbank format

Contains Haskell datastructures for Genbank format and for contained features, subfeatures

Bio.GenbankParser - Parse Genbank format

Contains Haskell functions to parse Genbank format from files or internal Strings.

Bio.GenbankTools - Tools for processing Genbank

Contains Haskell functions to extract nucleotide sequences for features


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Properties

Versions1.0.0, 1.0.1, 1.0.1, 1.0.2, 1.0.3
Change logNone available
Dependenciesbase (>=4.5 && <5), biocore, biofasta, bytestring, parsec, split [details]
LicenseGPL
AuthorFlorian Eggenhofer
Maintaineregg@tbi.univie.ac.at
CategoryBioinformatics
Source repositoryhead: git clone https://github.com/eggzilla/Genbank
this: git clone https://github.com/eggzilla/Genbank/tree/1.0.1(tag v1.0.1)
UploadedMon Sep 8 20:38:19 UTC 2014 by FlorianEggenhofer

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Readme for Genbank-1.0.1

#Genbank Haskell cabal Genbank libary contains tools, parser and datastructures for the NCBI (National Center for Biotechnology Information) Genbank format. For more information on genbank refer to:

http://www.ncbi.nlm.nih.gov/genbank/

For a sample genbank record see:

http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html

###Datastructures for Genbank format (GenbankData.hs) Contains Haskell datastructures for Genbank format and for contained features, subfeatures ###Parse Genbank format (GenbankParser.hs) Contains Haskell functions to parse Genbank format from files or internal Strings. ###Tools for processing Genbank (GenbankTools) Contains Haskell functions to extract nucleotide sequences for features