The PrimitiveArray package

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generalized Algebraic Dynamic Programming

This library provides efficient multidimensional arrays. Import Data.PrimitiveArray for indices, lenses, and arrays.

For generalized ADP users, the library also provides the machinary to fill tables in the correct order required by usual CYK-style parsers, or regular grammars (used e.g. in alignment algorithms). This means that unless your grammar require a strange order in which parsing is to be performed, it will mostly "just work".

In general all operations are (highly) unsafe, no bounds-checking or other sanity-checking is performed. Operations are aimed toward efficiency as much as possible.


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Versions0.0.2.1, 0.0.2.2, 0.0.3.0, 0.0.3.1, 0.0.4.0, 0.1.1.2, 0.2.0.0, 0.2.1.0, 0.2.1.1, 0.2.2.0, 0.3.0.0, 0.4.0.0, 0.4.0.1, 0.5.0.0, 0.5.2.0, 0.5.3.0, 0.5.4.0, 0.6.0.0, 0.6.1.0, 0.7.0.0, 0.7.0.1, 0.7.1.0, 0.7.1.0, 0.8.0.0, 0.8.0.1
Change logchangelog.md
Dependenciesaeson (>=0.8 && <1.1), base (>=4.7 && <5.0), binary (>=0.7 && <0.9), bits (>=0.4 && <0.6), cereal (>=0.4 && <0.6), cereal-vector (==0.2.*), deepseq (>=1.3 && <1.5), DPutils (==0.0.0.*), hashable (==1.2.*), OrderedBits (==0.0.1.*), primitive (>=0.5.4 && <0.7), QuickCheck (>=2.7 && <2.9), smallcheck (==1.1.*), vector (>=0.10 && <0.12), vector-binary-instances (==0.2.*), vector-th-unbox (==0.2.*) [details]
LicenseBSD3
CopyrightChristian Hoener zu Siederdissen, 2011-2016
AuthorChristian Hoener zu Siederdissen, 2011-2016
Maintainerchoener@bioinf.uni-leipzig.de
CategoryData
Home pagehttps://github.com/choener/PrimitiveArray
Bug trackerhttps://github.com/choener/PrimitiveArray/issues
Source repositoryhead: git clone git://github.com/choener/PrimitiveArray
UploadedThu Sep 1 13:37:12 UTC 2016 by ChristianHoener

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PrimitiveArray

generalized Algebraic Dynamic Programming Homepage

PrimitiveArray provides operations on multi-dimensional arrays. Internally, the representation is based on the vector library, while the multi-dimensional indexing follows repa.

Primitive arrays are designed to be used together with ADPfusion.

Contact

Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
choener@bioinf.uni-leipzig.de
http://www.bioinf.uni-leipzig.de/~choener/