The RNAFold package

RNAfold v2 using the ADPfusion library. The RNAfold algorithm is used to determine how fast we can be compared to a highly optimized C program.

If possible, build using the GHC llvm backend, and GHC-7.2.2. GHC-7.4.x produces very bad code on my system, please benchmark using 7.2.2.

NOTE I'd like to rename this package to RNAfold, like the C implementation. Do not install globally, especially if you normally use RNAfold from the ViennaRNA package, for obvious reasons.

NOTE I am reluctant to call this v2 for now.

Properties

Versions	0.0.2.1, 1.99.1.0, 1.99.1.1, 1.99.1.2, 1.99.1.3
Dependencies	ADPfusion (0.0.1.0), base (4.), BiobaseVienna (0.2.2.3), BiobaseXNA (0.6.2.2), mtl, primitive (0.4.), PrimitiveArray (0.2.1.1), strict, vector (0.9.*)
License	GPL-3
Copyright	Christian Hoener zu Siederdissen, 2010-2012
Author	Christian Hoener zu Siederdissen (Haskell), Ivo L. Hofacker et al (ViennaRNA), 2010-2012
Maintainer	choener@tbi.univie.ac.at
Stability	experimental
Category	Bioinformatics
Home page	http://www.tbi.univie.ac.at/~choener/adpfusion
Source repository	git clone git://github.com/choener/RNAfold
Executables	RNAFold
Upload date	Fri Mar 30 00:59:22 UTC 2012
Uploaded by	ChristianHoener
Build failure	ghc-7.4 (log)

Modules

BioInf
- BioInf.RNAfold
  - BioInf.RNAfold.Combinators
  - BioInf.RNAfold.Energy
  - BioInf.RNAfold.Library

Downloads

RNAFold-1.99.1.0.tar.gz (Cabal source package)
package description (included in the package)