The RNAFold package
RNAfold v2 using the ADPfusion library. The RNAfold algorithm is used to determine how fast we can be compared to a highly optimized C program.
If possible, build using the GHC llvm backend, and GHC-7.2.2. GHC-7.4.x produces very bad code on my system, please benchmark using 7.2.2.
NOTE I'd like to rename this package to RNAfold, like the C implementation. Do not install globally, especially if you normally use RNAfold from the ViennaRNA package, for obvious reasons.
NOTE I am reluctant to call this v2 for now.
Properties
| Versions | 0.0.2.1, 1.99.1.0, 1.99.1.1, 1.99.1.2, 1.99.1.3 |
|---|---|
| Dependencies | ADPfusion (0.0.1.1), base (4.*), BiobaseVienna (0.2.2.4), BiobaseXNA (0.6.2.4), mtl (≥2), primitive (0.4.*), PrimitiveArray (0.2.1.1), strict (≥0.3.2), vector (0.9.*) |
| License | GPL-3 |
| Copyright | Christian Hoener zu Siederdissen, 2010-2012 |
| Author | Christian Hoener zu Siederdissen (Haskell), Ivo L. Hofacker et al (ViennaRNA), 2010-2012 |
| Maintainer | choener@tbi.univie.ac.at |
| Stability | experimental |
| Category | Bioinformatics |
| Home page | http://www.tbi.univie.ac.at/~choener/adpfusion |
| Source repository | git clone git://github.com/choener/RNAfold |
| Executables | RNAFold |
| Upload date | Sun May 20 16:49:47 UTC 2012 |
| Uploaded by | ChristianHoener |
| Built on | ghc-7.4 |
Modules
Downloads
- RNAFold-1.99.1.2.tar.gz (Cabal source package)
- package description (included in the package)