The RNAFold package
RNAfold v2 using the ADPfusion library. The RNAfold algorithm is used to determine how fast we can be compared to a highly optimized C program.
If possible, build using the GHC llvm backend, and GHC-7.2.2. GHC-7.4.x produces very bad code on my system, please benchmark using 7.2.2.
NOTE I'd like to rename this package to RNAfold, like the C implementation. Do not install globally, especially if you normally use RNAfold from the ViennaRNA package, for obvious reasons.
NOTE I am reluctant to call this v2 for now.
- No changelog available
Properties
| Versions | 0.0.2.1, 1.99.1.0, 1.99.1.1, 1.99.1.2, 1.99.1.3, 1.99.3.4 |
|---|---|
| Dependencies | ADPfusion (==0.0.1.1), base (==4.*), BiobaseVienna (==0.2.2.4), BiobaseXNA (==0.6.2.4), mtl (>=2), primitive (==0.4.*), PrimitiveArray (==0.2.1.1), strict (>=0.3.2), vector (==0.9.*) |
| License | GPL-3 |
| Copyright | Christian Hoener zu Siederdissen, 2010-2012 |
| Author | Christian Hoener zu Siederdissen (Haskell), Ivo L. Hofacker et al (ViennaRNA), 2010-2012 |
| Maintainer | choener@tbi.univie.ac.at |
| Stability | experimental |
| Category | Bioinformatics |
| Home page | http://www.tbi.univie.ac.at/~choener/adpfusion |
| Source repository | head: git clone git://github.com/choener/RNAfold |
| Executables | RNAFold |
| Upload date | Sun May 20 16:49:47 UTC 2012 |
| Uploaded by | ChristianHoener |
| Downloads | 409 total (51 in last 30 days) |
Modules
Flags
| Name | Description | Default |
|---|---|---|
| llvm | build using llvm backend | Enabled |
Use -f <flag> to enable a flag, or -f -<flag> to disable that flag. More info
Downloads
- RNAFold-1.99.1.2.tar.gz [browse] (Cabal source package)
- Package description (included in the package)
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