The RNAFold package

[Tags: gpl, library, program]

RNAfold v2 using the ADPfusion library. The RNAfold algorithm is used to determine how fast we can be compared to a highly optimized C program.

If possible, build using the GHC llvm backend, and GHC-7.2.2. GHC-7.4.x produces very bad code on my system, please benchmark using 7.2.2.

NOTE I'd like to rename this package to RNAfold, like the C implementation. Do not install globally, especially if you normally use RNAfold from the ViennaRNA package, for obvious reasons.

NOTE I am reluctant to call this v2 for now.


Properties

Versions0.0.2.1, 1.99.1.0, 1.99.1.1, 1.99.1.2, 1.99.1.3, 1.99.3.4
DependenciesADPfusion (==0.0.1.2), base (==4.*), BiobaseVienna (==0.2.2.5), BiobaseXNA (==0.6.2.5), mtl (>=2), primitive (==0.4.*), PrimitiveArray (==0.2.2.0), strict (>=0.3.2), vector (==0.9.*)
LicenseGPL-3
CopyrightChristian Hoener zu Siederdissen, 2010-2012
AuthorChristian Hoener zu Siederdissen (Haskell), Ivo L. Hofacker et al (ViennaRNA), 2010-2012
Maintainerchoener@tbi.univie.ac.at
Stabilityexperimental
CategoryBioinformatics
Home pagehttp://www.tbi.univie.ac.at/~choener/adpfusion
Source repositoryhead: git clone git://github.com/choener/RNAfold
ExecutablesRNAFold
Upload dateSun Jul 8 01:31:57 UTC 2012
Uploaded byChristianHoener
Downloads409 total (57 in last 30 days)

Modules

Flags

NameDescriptionDefault
llvmbuild using llvm backendEnabled

Use -f <flag> to enable a flag, or -f -<flag> to disable that flag. More info

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