Build #1 for RNAFoldProgs-0.0.0.3
| Package | RNAFoldProgs-0.0.0.3 |
|---|
| Install | DependencyFailed BiobaseVienna-0.0.2.3 |
|---|---|
| Docs | NotTried |
| Tests | NotTried |
| Time submitted | unknown |
|---|---|
| Compiler | ghc-7.6.3 |
| OS | linux |
| Arch | x86_64 |
| Dependencies | vector-0.7.1, split-0.1.2.3, primitive-0.3.1, containers-0.5.0.0, cmdargs-0.6, base-4.6.0.1, RNAFold-0.0.2.1, PrimitiveArray-0.0.2.2, HsTools-0.0.1.1, BiobaseVienna-0.0.2.3, BiobaseTypes-0.0.2.2, BiobaseTurner-0.0.2.2, Biobase-0.0.2.1 |
| Flags | none |
Code Coverage
No Code Coverage was submitted for this report.
Build log
[view raw]
Resolving dependencies...
Configuring HsTools-0.0.1.1...
Building HsTools-0.0.1.1...
Preprocessing library HsTools-0.0.1.1...
[1 of 3] Compiling Debug.Trace.Tools ( Debug/Trace/Tools.hs, dist/build/Debug/Trace/Tools.o )
[2 of 3] Compiling Data.Ix.List ( Data/Ix/List.hs, dist/build/Data/Ix/List.o )
[3 of 3] Compiling Data.Ix.Tuple ( Data/Ix/Tuple.hs, dist/build/Data/Ix/Tuple.o )
In-place registering HsTools-0.0.1.1...
Running Haddock for HsTools-0.0.1.1...
Running hscolour for HsTools-0.0.1.1...
Preprocessing library HsTools-0.0.1.1...
Preprocessing library HsTools-0.0.1.1...
Warning: The documentation for the following packages are not installed. No
links will be generated to these packages: rts-1.0
Haddock coverage:
75% ( 3 / 4) in 'Debug.Trace.Tools'
100% ( 4 / 4) in 'Data.Ix.List'
0% ( 0 / 1) in 'Data.Ix.Tuple'
Documentation created: dist/doc/html/HsTools/index.html
Installing library in
/srv/hackage/var/build/tmp-install/lib/HsTools-0.0.1.1/ghc-7.6.3
Registering HsTools-0.0.1.1...
Installed HsTools-0.0.1.1
Configuring OneTuple-0.2.1...
Building OneTuple-0.2.1...
Preprocessing library OneTuple-0.2.1...
[1 of 1] Compiling Data.Tuple.OneTuple ( Data/Tuple/OneTuple.hs, dist/build/Data/Tuple/OneTuple.o )
In-place registering OneTuple-0.2.1...
Running Haddock for OneTuple-0.2.1...
Running hscolour for OneTuple-0.2.1...
Preprocessing library OneTuple-0.2.1...
Preprocessing library OneTuple-0.2.1...
Warning: The documentation for the following packages are not installed. No
links will be generated to these packages: rts-1.0
Haddock coverage:
100% ( 3 / 3) in 'Data.Tuple.OneTuple'
Documentation created: dist/doc/html/OneTuple/index.html
Installing library in
/srv/hackage/var/build/tmp-install/lib/OneTuple-0.2.1/ghc-7.6.3
Registering OneTuple-0.2.1...
Installed OneTuple-0.2.1
Configuring ParsecTools-0.0.2.0...
Building ParsecTools-0.0.2.0...
Preprocessing library ParsecTools-0.0.2.0...
[1 of 1] Compiling Text.Parsec.Numbers ( Text/Parsec/Numbers.hs, dist/build/Text/Parsec/Numbers.o )
In-place registering ParsecTools-0.0.2.0...
Running Haddock for ParsecTools-0.0.2.0...
Running hscolour for ParsecTools-0.0.2.0...
Preprocessing library ParsecTools-0.0.2.0...
Preprocessing library ParsecTools-0.0.2.0...
Warning: The documentation for the following packages are not installed. No
links will be generated to these packages: rts-1.0, mtl-2.1.2, parsec-3.1.3,
text-0.11.2.3, transformers-0.3.0.0
Haddock coverage:
100% ( 5 / 5) in 'Text.Parsec.Numbers'
Warning: Text.Parsec.Numbers: could not find link destinations for:
Text.Parsec.String.GenParser
Documentation created: dist/doc/html/ParsecTools/index.html
Installing library in
/srv/hackage/var/build/tmp-install/lib/ParsecTools-0.0.2.0/ghc-7.6.3
Registering ParsecTools-0.0.2.0...
Installed ParsecTools-0.0.2.0
Downloading cmdargs-0.6...
Configuring cmdargs-0.6...
Building cmdargs-0.6...
Preprocessing library cmdargs-0.6...
[ 1 of 19] Compiling System.Console.CmdArgs.Implicit.Ann ( System/Console/CmdArgs/Implicit/Ann.hs, dist/build/System/Console/CmdArgs/Implicit/Ann.o )
[ 2 of 19] Compiling System.Console.CmdArgs.Implicit.UI ( System/Console/CmdArgs/Implicit/UI.hs, dist/build/System/Console/CmdArgs/Implicit/UI.o )
[ 3 of 19] Compiling System.Console.CmdArgs.Verbosity ( System/Console/CmdArgs/Verbosity.hs, dist/build/System/Console/CmdArgs/Verbosity.o )
[ 4 of 19] Compiling System.Console.CmdArgs.Implicit.Type ( System/Console/CmdArgs/Implicit/Type.hs, dist/build/System/Console/CmdArgs/Implicit/Type.o )
[ 5 of 19] Compiling System.Console.CmdArgs.Explicit.Type ( System/Console/CmdArgs/Explicit/Type.hs, dist/build/System/Console/CmdArgs/Explicit/Type.o )
[ 6 of 19] Compiling System.Console.CmdArgs.Explicit.Process ( System/Console/CmdArgs/Explicit/Process.hs, dist/build/System/Console/CmdArgs/Explicit/Process.o )
[ 7 of 19] Compiling System.Console.CmdArgs.Default ( System/Console/CmdArgs/Default.hs, dist/build/System/Console/CmdArgs/Default.o )
[ 8 of 19] Compiling System.Console.CmdArgs.Text ( System/Console/CmdArgs/Text.hs, dist/build/System/Console/CmdArgs/Text.o )
[ 9 of 19] Compiling System.Console.CmdArgs.Explicit.Help ( System/Console/CmdArgs/Explicit/Help.hs, dist/build/System/Console/CmdArgs/Explicit/Help.o )
[10 of 19] Compiling System.Console.CmdArgs.Explicit ( System/Console/CmdArgs/Explicit.hs, dist/build/System/Console/CmdArgs/Explicit.o )
[11 of 19] Compiling System.Console.CmdArgs.GetOpt ( System/Console/CmdArgs/GetOpt.hs, dist/build/System/Console/CmdArgs/GetOpt.o )
[12 of 19] Compiling Data.Generics.Any ( Data/Generics/Any.hs, dist/build/Data/Generics/Any.o )
Data/Generics/Any.hs:93:25:
Couldn't match type `m0 b0'
with `forall d.
Data d =>
StateT [Any] transformers-0.3.0.0:Data.Functor.Identity.Identity d'
Expected type: m0 [Any]
-> ([Any] -> m0 b0)
-> forall d.
Data d =>
StateT [Any] transformers-0.3.0.0:Data.Functor.Identity.Identity d
Actual type: m0 [Any] -> ([Any] -> m0 b0) -> m0 b0
In a stmt of a 'do' block: cs <- get
In the second argument of `($)', namely
`do { cs <- get;
if null cs then
err
else
do { put $ tail cs;
.... } }'
In the second argument of `($)', namely
`flip fromConstrM (D.toConstr x)
$ do { cs <- get;
if null cs then
err
else
do { put $ tail cs;
.... } }'
Failed to install cmdargs-0.6
Configuring file-embed-0.0.6...
Building file-embed-0.0.6...
Preprocessing library file-embed-0.0.6...
[1 of 1] Compiling Data.FileEmbed ( Data/FileEmbed.hs, dist/build/Data/FileEmbed.o )
In-place registering file-embed-0.0.6...
Running Haddock for file-embed-0.0.6...
Running hscolour for file-embed-0.0.6...
Preprocessing library file-embed-0.0.6...
Preprocessing library file-embed-0.0.6...
Warning: The documentation for the following packages are not installed. No
links will be generated to these packages: rts-1.0
Haddock coverage:
67% ( 8 / 12) in 'Data.FileEmbed'
Documentation created: dist/doc/html/file-embed/index.html
Installing library in
/srv/hackage/var/build/tmp-install/lib/file-embed-0.0.6/ghc-7.6.3
Registering file-embed-0.0.6...
Installed file-embed-0.0.6
Configuring primitive-0.3.1...
Building primitive-0.3.1...
Preprocessing library primitive-0.3.1...
[1 of 7] Compiling Data.Primitive.MachDeps ( Data/Primitive/MachDeps.hs, dist/build/Data/Primitive/MachDeps.o )
[2 of 7] Compiling Control.Monad.Primitive ( Control/Monad/Primitive.hs, dist/build/Control/Monad/Primitive.o )
Control/Monad/Primitive.hs:24:1: Warning:
Module `GHC.IOBase' is deprecated: use GHC.IO instead
[3 of 7] Compiling Data.Primitive.Types ( Data/Primitive/Types.hs, dist/build/Data/Primitive/Types.o )
Data/Primitive/Types.hs:57:18: Warning:
In the use of `mkNorepType' (imported from Data.Data):
Deprecated: "Use mkNoRepType instead"
[4 of 7] Compiling Data.Primitive.Array ( Data/Primitive/Array.hs, dist/build/Data/Primitive/Array.o )
Data/Primitive/Array.hs:112:18: Warning:
In the use of `mkNorepType' (imported from Data.Data):
Deprecated: "Use mkNoRepType instead"
Data/Primitive/Array.hs:117:18: Warning:
In the use of `mkNorepType' (imported from Data.Data):
Deprecated: "Use mkNoRepType instead"
[5 of 7] Compiling Data.Primitive.ByteArray ( Data/Primitive/ByteArray.hs, dist/build/Data/Primitive/ByteArray.o )
Data/Primitive/ByteArray.hs:203:18: Warning:
In the use of `mkNorepType' (imported from Data.Data):
Deprecated: "Use mkNoRepType instead"
Data/Primitive/ByteArray.hs:208:18: Warning:
In the use of `mkNorepType' (imported from Data.Data):
Deprecated: "Use mkNoRepType instead"
[6 of 7] Compiling Data.Primitive.Addr ( Data/Primitive/Addr.hs, dist/build/Data/Primitive/Addr.o )
[7 of 7] Compiling Data.Primitive ( Data/Primitive.hs, dist/build/Data/Primitive.o )
In-place registering primitive-0.3.1...
Running Haddock for primitive-0.3.1...
Running hscolour for primitive-0.3.1...
Preprocessing library primitive-0.3.1...
Preprocessing library primitive-0.3.1...
Warning: The documentation for the following packages are not installed. No
links will be generated to these packages: rts-1.0
dist/build/tmp-32182/Control/Monad/Primitive.hs:24:1: Warning:
Module `GHC.IOBase' is deprecated: use GHC.IO instead
dist/build/tmp-32182/Data/Primitive/Types.hs:57:18: Warning:
In the use of `mkNorepType' (imported from Data.Data):
Deprecated: "Use mkNoRepType instead"
dist/build/tmp-32182/Data/Primitive/Array.hs:112:18: Warning:
In the use of `mkNorepType' (imported from Data.Data):
Deprecated: "Use mkNoRepType instead"
dist/build/tmp-32182/Data/Primitive/Array.hs:117:18: Warning:
In the use of `mkNorepType' (imported from Data.Data):
Deprecated: "Use mkNoRepType instead"
dist/build/tmp-32182/Data/Primitive/ByteArray.hs:203:18: Warning:
In the use of `mkNorepType' (imported from Data.Data):
Deprecated: "Use mkNoRepType instead"
dist/build/tmp-32182/Data/Primitive/ByteArray.hs:208:18: Warning:
In the use of `mkNorepType' (imported from Data.Data):
Deprecated: "Use mkNoRepType instead"
Haddock coverage:
3% ( 1 / 33) in 'Data.Primitive.MachDeps'
Warning: Control.Monad.Primitive: We do not support associated types in instances yet. These instances are affected:
Control.Monad.Primitive.PrimMonad GHC.Types.IO, Control.Monad.Primitive.PrimMonad (GHC.ST.ST s)
71% ( 10 / 14) in 'Control.Monad.Primitive'
100% ( 3 / 3) in 'Data.Primitive.Types'
100% ( 11 / 11) in 'Data.Primitive.Array'
73% ( 16 / 22) in 'Data.Primitive.ByteArray'
80% ( 8 / 10) in 'Data.Primitive.Addr'
100% ( 7 / 7) in 'Data.Primitive'
Documentation created: dist/doc/html/primitive/index.html
Installing library in
/srv/hackage/var/build/tmp-install/lib/primitive-0.3.1/ghc-7.6.3
Registering primitive-0.3.1...
Installed primitive-0.3.1
Downloading split-0.1.2.3...
Configuring split-0.1.2.3...
Building split-0.1.2.3...
Preprocessing library split-0.1.2.3...
[1 of 2] Compiling Data.List.Split.Internals ( Data/List/Split/Internals.hs, dist/build/Data/List/Split/Internals.o )
[2 of 2] Compiling Data.List.Split ( Data/List/Split.hs, dist/build/Data/List/Split.o )
In-place registering split-0.1.2.3...
Running Haddock for split-0.1.2.3...
Running hscolour for split-0.1.2.3...
Preprocessing library split-0.1.2.3...
Preprocessing library split-0.1.2.3...
Warning: The documentation for the following packages are not installed. No
links will be generated to these packages: rts-1.0
Haddock coverage:
97% ( 62 / 64) in 'Data.List.Split.Internals'
100% ( 45 / 45) in 'Data.List.Split'
Documentation created: dist/doc/html/split/index.html
Installing library in
/srv/hackage/var/build/tmp-install/lib/split-0.1.2.3/ghc-7.6.3
Registering split-0.1.2.3...
Installed split-0.1.2.3
Configuring unix-compat-0.4.1.1...
Building unix-compat-0.4.1.1...
Preprocessing library unix-compat-0.4.1.1...
[1 of 8] Compiling System.PosixCompat.User ( dist/build/System/PosixCompat/User.hs, dist/build/System/PosixCompat/User.o )
[2 of 8] Compiling System.PosixCompat.Unistd ( src/System/PosixCompat/Unistd.hs, dist/build/System/PosixCompat/Unistd.o )
[3 of 8] Compiling System.PosixCompat.Types ( src/System/PosixCompat/Types.hs, dist/build/System/PosixCompat/Types.o )
[4 of 8] Compiling System.PosixCompat.Extensions ( dist/build/System/PosixCompat/Extensions.hs, dist/build/System/PosixCompat/Extensions.o )
[5 of 8] Compiling System.PosixCompat.Time ( src/System/PosixCompat/Time.hs, dist/build/System/PosixCompat/Time.o )
[6 of 8] Compiling System.PosixCompat.Temp ( src/System/PosixCompat/Temp.hs, dist/build/System/PosixCompat/Temp.o )
[7 of 8] Compiling System.PosixCompat.Files ( dist/build/System/PosixCompat/Files.hs, dist/build/System/PosixCompat/Files.o )
[8 of 8] Compiling System.PosixCompat ( src/System/PosixCompat.hs, dist/build/System/PosixCompat.o )
In-place registering unix-compat-0.4.1.1...
Running Haddock for unix-compat-0.4.1.1...
Running hscolour for unix-compat-0.4.1.1...
Preprocessing library unix-compat-0.4.1.1...
Preprocessing library unix-compat-0.4.1.1...
Warning: The documentation for the following packages are not installed. No
links will be generated to these packages: rts-1.0
Haddock coverage:
91% ( 21 / 23) in 'System.PosixCompat.User'
75% ( 6 / 8) in 'System.PosixCompat.Unistd'
100% ( 2 / 2) in 'System.PosixCompat.Types'
71% ( 5 / 7) in 'System.PosixCompat.Extensions'
100% ( 2 / 2) in 'System.PosixCompat.Time'
100% ( 2 / 2) in 'System.PosixCompat.Temp'
99% ( 77 / 78) in 'System.PosixCompat.Files'
100% ( 8 / 8) in 'System.PosixCompat'
Documentation created: dist/doc/html/unix-compat/index.html
Installing library in
/srv/hackage/var/build/tmp-install/lib/unix-compat-0.4.1.1/ghc-7.6.3
Registering unix-compat-0.4.1.1...
Installed unix-compat-0.4.1.1
Configuring tuple-0.2.0.1...
Building tuple-0.2.0.1...
Preprocessing library tuple-0.2.0.1...
[1 of 5] Compiling Data.Tuple.Update ( src/Data/Tuple/Update.hs, dist/build/Data/Tuple/Update.o )
[2 of 5] Compiling Data.Tuple.Sequence ( src/Data/Tuple/Sequence.hs, dist/build/Data/Tuple/Sequence.o )
[3 of 5] Compiling Data.Tuple.Select ( src/Data/Tuple/Select.hs, dist/build/Data/Tuple/Select.o )
[4 of 5] Compiling Data.Tuple.Curry ( src/Data/Tuple/Curry.hs, dist/build/Data/Tuple/Curry.o )
[5 of 5] Compiling Data.Tuple.All ( src/Data/Tuple/All.hs, dist/build/Data/Tuple/All.o )
In-place registering tuple-0.2.0.1...
Running Haddock for tuple-0.2.0.1...
Running hscolour for tuple-0.2.0.1...
Preprocessing library tuple-0.2.0.1...
Preprocessing library tuple-0.2.0.1...
Warning: The documentation for the following packages are not installed. No
links will be generated to these packages: rts-1.0
Haddock coverage:
0% ( 0 / 16) in 'Data.Tuple.Update'
50% ( 1 / 2) in 'Data.Tuple.Sequence'
0% ( 0 / 16) in 'Data.Tuple.Select'
50% ( 1 / 2) in 'Data.Tuple.Curry'
83% ( 5 / 6) in 'Data.Tuple.All'
Documentation created: dist/doc/html/tuple/index.html
Installing library in
/srv/hackage/var/build/tmp-install/lib/tuple-0.2.0.1/ghc-7.6.3
Registering tuple-0.2.0.1...
Installed tuple-0.2.0.1
Downloading PrimitiveArray-0.0.2.2...
Configuring PrimitiveArray-0.0.2.2...
Building PrimitiveArray-0.0.2.2...
Preprocessing library PrimitiveArray-0.0.2.2...
[1 of 3] Compiling Data.PrimitiveArray.Internal ( Data/PrimitiveArray/Internal.hs, dist/build/Data/PrimitiveArray/Internal.o )
[2 of 3] Compiling Data.PrimitiveArray ( Data/PrimitiveArray.hs, dist/build/Data/PrimitiveArray.o )
[3 of 3] Compiling Data.PrimitiveArray.Ix ( Data/PrimitiveArray/Ix.hs, dist/build/Data/PrimitiveArray/Ix.o )
Data/PrimitiveArray/Ix.hs:27:24: Warning:
Ignoring unusable UNPACK pragma on the first argument of `PaIxP'
In the definition of data constructor `PaIxP'
In the data instance declaration for `PrimArray'
In the instance declaration for `PrimArrayOps a b'
Data/PrimitiveArray/Ix.hs:27:24: Warning:
Ignoring unusable UNPACK pragma on the second argument of `PaIxP'
In the definition of data constructor `PaIxP'
In the data instance declaration for `PrimArray'
In the instance declaration for `PrimArrayOps a b'
Data/PrimitiveArray/Ix.hs:48:32: Warning:
Ignoring unusable UNPACK pragma on the first argument of `PaIxPM'
In the definition of data constructor `PaIxPM'
In the data instance declaration for `PrimArrayM'
In the instance declaration for `PrimArrayOpsM a b (ST s)'
Data/PrimitiveArray/Ix.hs:48:32: Warning:
Ignoring unusable UNPACK pragma on the second argument of `PaIxPM'
In the definition of data constructor `PaIxPM'
In the data instance declaration for `PrimArrayM'
In the instance declaration for `PrimArrayOpsM a b (ST s)'
In-place registering PrimitiveArray-0.0.2.2...
Running Haddock for PrimitiveArray-0.0.2.2...
Running hscolour for PrimitiveArray-0.0.2.2...
Preprocessing library PrimitiveArray-0.0.2.2...
Preprocessing library PrimitiveArray-0.0.2.2...
Warning: The documentation for the following packages are not installed. No
links will be generated to these packages: rts-1.0
dist/build/tmp-32182/Data/PrimitiveArray/Ix.hs:27:24: Warning:
Ignoring unusable UNPACK pragma on the first argument of `PaIxP'
In the definition of data constructor `PaIxP'
In the data instance declaration for `PrimArray'
In the instance declaration for `PrimArrayOps a b'
dist/build/tmp-32182/Data/PrimitiveArray/Ix.hs:27:24: Warning:
Ignoring unusable UNPACK pragma on the second argument of `PaIxP'
In the definition of data constructor `PaIxP'
In the data instance declaration for `PrimArray'
In the instance declaration for `PrimArrayOps a b'
dist/build/tmp-32182/Data/PrimitiveArray/Ix.hs:48:32: Warning:
Ignoring unusable UNPACK pragma on the first argument of `PaIxPM'
In the definition of data constructor `PaIxPM'
In the data instance declaration for `PrimArrayM'
In the instance declaration for `PrimArrayOpsM a b (ST s)'
dist/build/tmp-32182/Data/PrimitiveArray/Ix.hs:48:32: Warning:
Ignoring unusable UNPACK pragma on the second argument of `PaIxPM'
In the definition of data constructor `PaIxPM'
In the data instance declaration for `PrimArrayM'
In the instance declaration for `PrimArrayOpsM a b (ST s)'
Haddock coverage:
100% ( 3 / 3) in 'Data.PrimitiveArray.Internal'
71% ( 5 / 7) in 'Data.PrimitiveArray'
Warning: Data.PrimitiveArray.Ix: We do not support associated types in instances yet. These instances are affected:
(GHC.Enum.Bounded a, GHC.Arr.Ix a, Data.Primitive.Types.Prim b) =>
Data.PrimitiveArray.PrimArrayOps a b, (GHC.Enum.Bounded a, GHC.Arr.Ix a, Data.Primitive.Types.Prim b) =>
Data.PrimitiveArray.PrimArrayOpsM a b (GHC.ST.ST s)
100% ( 1 / 1) in 'Data.PrimitiveArray.Ix'
Documentation created: dist/doc/html/PrimitiveArray/index.html
Installing library in
/srv/hackage/var/build/tmp-install/lib/PrimitiveArray-0.0.2.2/ghc-7.6.3
Registering PrimitiveArray-0.0.2.2...
Installed PrimitiveArray-0.0.2.2
Configuring vector-0.7.1...
Building vector-0.7.1...
Preprocessing library vector-0.7.1...
[ 1 of 19] Compiling Data.Vector.Storable.Internal ( Data/Vector/Storable/Internal.hs, dist/build/Data/Vector/Storable/Internal.o )
[ 2 of 19] Compiling Data.Vector.Fusion.Util ( Data/Vector/Fusion/Util.hs, dist/build/Data/Vector/Fusion/Util.o )
[ 3 of 19] Compiling Data.Vector.Fusion.Stream.Size ( Data/Vector/Fusion/Stream/Size.hs, dist/build/Data/Vector/Fusion/Stream/Size.o )
Data/Vector/Fusion/Stream/Size.hs:25:10: Warning:
No explicit method or default declaration for `*'
In the instance declaration for `Num Size'
Data/Vector/Fusion/Stream/Size.hs:25:10: Warning:
No explicit method or default declaration for `abs'
In the instance declaration for `Num Size'
Data/Vector/Fusion/Stream/Size.hs:25:10: Warning:
No explicit method or default declaration for `signum'
In the instance declaration for `Num Size'
[ 4 of 19] Compiling Data.Vector.Internal.Check ( Data/Vector/Internal/Check.hs, dist/build/Data/Vector/Internal/Check.o )
[ 5 of 19] Compiling Data.Vector.Fusion.Stream.Monadic ( Data/Vector/Fusion/Stream/Monadic.hs, dist/build/Data/Vector/Fusion/Stream/Monadic.o )
Loading package ghc-prim ... linking ... done.
Loading package integer-gmp ... linking ... done.
Loading package base ... linking ... done.
Loading package primitive-0.3.1 ... linking ... done.
[ 6 of 19] Compiling Data.Vector.Fusion.Stream ( Data/Vector/Fusion/Stream.hs, dist/build/Data/Vector/Fusion/Stream.o )
[ 7 of 19] Compiling Data.Vector.Generic.Mutable ( Data/Vector/Generic/Mutable.hs, dist/build/Data/Vector/Generic/Mutable.o )
[ 8 of 19] Compiling Data.Vector.Generic.Base ( Data/Vector/Generic/Base.hs, dist/build/Data/Vector/Generic/Base.o )
[ 9 of 19] Compiling Data.Vector.Generic.New ( Data/Vector/Generic/New.hs, dist/build/Data/Vector/Generic/New.o )
[10 of 19] Compiling Data.Vector.Generic ( Data/Vector/Generic.hs, dist/build/Data/Vector/Generic.o )
[11 of 19] Compiling Data.Vector.Primitive.Mutable ( Data/Vector/Primitive/Mutable.hs, dist/build/Data/Vector/Primitive/Mutable.o )
[12 of 19] Compiling Data.Vector.Primitive ( Data/Vector/Primitive.hs, dist/build/Data/Vector/Primitive.o )
[13 of 19] Compiling Data.Vector.Storable.Mutable ( Data/Vector/Storable/Mutable.hs, dist/build/Data/Vector/Storable/Mutable.o )
[14 of 19] Compiling Data.Vector.Storable ( Data/Vector/Storable.hs, dist/build/Data/Vector/Storable.o )
[15 of 19] Compiling Data.Vector.Unboxed.Base ( Data/Vector/Unboxed/Base.hs, dist/build/Data/Vector/Unboxed/Base.o )
Data/Vector/Unboxed/Base.hs:55:27: Warning:
In the use of `mkTyCon' (imported from Data.Typeable):
Deprecated: "either derive Typeable, or use mkTyCon3 instead"
Data/Vector/Unboxed/Base.hs:58:27: Warning:
In the use of `mkTyCon' (imported from Data.Typeable):
Deprecated: "either derive Typeable, or use mkTyCon3 instead"
[16 of 19] Compiling Data.Vector.Unboxed ( Data/Vector/Unboxed.hs, dist/build/Data/Vector/Unboxed.o )
[17 of 19] Compiling Data.Vector.Unboxed.Mutable ( Data/Vector/Unboxed/Mutable.hs, dist/build/Data/Vector/Unboxed/Mutable.o )
[18 of 19] Compiling Data.Vector.Mutable ( Data/Vector/Mutable.hs, dist/build/Data/Vector/Mutable.o )
[19 of 19] Compiling Data.Vector ( Data/Vector.hs, dist/build/Data/Vector.o )
In-place registering vector-0.7.1...
Running Haddock for vector-0.7.1...
Running hscolour for vector-0.7.1...
Preprocessing library vector-0.7.1...
Preprocessing library vector-0.7.1...
Warning: The documentation for the following packages are not installed. No
links will be generated to these packages: rts-1.0
Data/Vector/Fusion/Stream/Size.hs:25:10: Warning:
No explicit method or default declaration for `*'
In the instance declaration for `Num Size'
Data/Vector/Fusion/Stream/Size.hs:25:10: Warning:
No explicit method or default declaration for `abs'
In the instance declaration for `Num Size'
Data/Vector/Fusion/Stream/Size.hs:25:10: Warning:
No explicit method or default declaration for `signum'
In the instance declaration for `Num Size'
Data/Vector/Unboxed/Base.hs:55:27: Warning:
In the use of `mkTyCon' (imported from Data.Typeable):
Deprecated: "either derive Typeable, or use mkTyCon3 instead"
Data/Vector/Unboxed/Base.hs:58:27: Warning:
In the use of `mkTyCon' (imported from Data.Typeable):
Deprecated: "either derive Typeable, or use mkTyCon3 instead"
Haddock coverage:
33% ( 1 / 3) in 'Data.Vector.Storable.Internal'
100% ( 5 / 5) in 'Data.Vector.Fusion.Util'
100% ( 6 / 6) in 'Data.Vector.Fusion.Stream.Size'
10% ( 1 / 10) in 'Data.Vector.Internal.Check'
83% (103 /124) in 'Data.Vector.Fusion.Stream.Monadic'
84% ( 87 /103) in 'Data.Vector.Fusion.Stream'
67% ( 45 / 67) in 'Data.Vector.Generic.Mutable'
100% ( 3 / 3) in 'Data.Vector.Generic.Base'
5% ( 1 / 19) in 'Data.Vector.Generic.New'
93% (210 /227) in 'Data.Vector.Generic'
77% ( 41 / 53) in 'Data.Vector.Primitive.Mutable'
Warning: Data.Vector.Primitive: Instances of type and data families are not yet supported. Instances of the following families will be filtered out:
Mutable
97% (183 /189) in 'Data.Vector.Primitive'
80% ( 47 / 59) in 'Data.Vector.Storable.Mutable'
Warning: Data.Vector.Storable: Instances of type and data families are not yet supported. Instances of the following families will be filtered out:
Mutable
97% (190 /196) in 'Data.Vector.Storable'
Warning: Data.Vector.Unboxed.Base: Instances of type and data families are not yet supported. Instances of the following families will be filtered out:
Mutable, MVector, Vector
17% ( 1 / 6) in 'Data.Vector.Unboxed.Base'
96% (199 /208) in 'Data.Vector.Unboxed'
78% ( 50 / 64) in 'Data.Vector.Unboxed.Mutable'
77% ( 40 / 52) in 'Data.Vector.Mutable'
Warning: Data.Vector: Instances of type and data families are not yet supported. Instances of the following families will be filtered out:
Mutable
94% (197 /210) in 'Data.Vector'
Documentation created: dist/doc/html/vector/index.html
Installing library in
/srv/hackage/var/build/tmp-install/lib/vector-0.7.1/ghc-7.6.3
Registering vector-0.7.1...
Installed vector-0.7.1
Configuring filemanip-0.3.6.2...
Building filemanip-0.3.6.2...
Preprocessing library filemanip-0.3.6.2...
[1 of 4] Compiling System.FilePath.Manip ( System/FilePath/Manip.hs, dist/build/System/FilePath/Manip.o )
[2 of 4] Compiling System.FilePath.GlobPattern ( System/FilePath/GlobPattern.hs, dist/build/System/FilePath/GlobPattern.o )
System/FilePath/GlobPattern.hs:149:22: Warning:
This binding for `g' shadows the existing binding
bound at System/FilePath/GlobPattern.hs:148:24
[3 of 4] Compiling System.FilePath.Glob ( System/FilePath/Glob.hs, dist/build/System/FilePath/Glob.o )
[4 of 4] Compiling System.FilePath.Find ( System/FilePath/Find.hs, dist/build/System/FilePath/Find.o )
System/FilePath/Find.hs:220:20: Warning:
This binding for `depth' shadows the existing binding
defined at System/FilePath/Find.hs:188:1
System/FilePath/Find.hs:224:22: Warning:
This binding for `depth' shadows the existing binding
defined at System/FilePath/Find.hs:188:1
System/FilePath/Find.hs:231:25: Warning:
This binding for `depth' shadows the existing binding
defined at System/FilePath/Find.hs:188:1
System/FilePath/Find.hs:267:15: Warning:
This binding for `state' shadows the existing binding
bound at System/FilePath/Find.hs:264:38
System/FilePath/Find.hs:267:21: Warning:
This binding for `path' shadows the existing binding
bound at System/FilePath/Find.hs:264:44
System/FilePath/Find.hs:267:26: Warning:
This binding for `depth' shadows the existing binding
defined at System/FilePath/Find.hs:188:1
System/FilePath/Find.hs:272:18: Warning:
This binding for `state' shadows the existing binding
bound at System/FilePath/Find.hs:264:38
System/FilePath/Find.hs:272:28: Warning:
This binding for `depth' shadows the existing binding
defined at System/FilePath/Find.hs:188:1
System/FilePath/Find.hs:275:53: Warning:
This binding for `state' shadows the existing binding
bound at System/FilePath/Find.hs:272:18
System/FilePath/Find.hs:277:25: Warning:
This binding for `path' shadows the existing binding
bound at System/FilePath/Find.hs:264:44
In-place registering filemanip-0.3.6.2...
Running Haddock for filemanip-0.3.6.2...
Running hscolour for filemanip-0.3.6.2...
Preprocessing library filemanip-0.3.6.2...
Preprocessing library filemanip-0.3.6.2...
Warning: The documentation for the following packages are not installed. No
links will be generated to these packages: rts-1.0, mtl-2.1.2,
transformers-0.3.0.0
dist/build/tmp-32182/System/FilePath/GlobPattern.hs:149:22: Warning:
This binding for `g' shadows the existing binding
bound at dist/build/tmp-32182/System/FilePath/GlobPattern.hs:148:24
dist/build/tmp-32182/System/FilePath/Find.hs:220:20: Warning:
This binding for `depth' shadows the existing binding
defined at dist/build/tmp-32182/System/FilePath/Find.hs:188:1
dist/build/tmp-32182/System/FilePath/Find.hs:224:22: Warning:
This binding for `depth' shadows the existing binding
defined at dist/build/tmp-32182/System/FilePath/Find.hs:188:1
dist/build/tmp-32182/System/FilePath/Find.hs:231:25: Warning:
This binding for `depth' shadows the existing binding
defined at dist/build/tmp-32182/System/FilePath/Find.hs:188:1
dist/build/tmp-32182/System/FilePath/Find.hs:267:15: Warning:
This binding for `state' shadows the existing binding
bound at dist/build/tmp-32182/System/FilePath/Find.hs:264:38
dist/build/tmp-32182/System/FilePath/Find.hs:267:21: Warning:
This binding for `path' shadows the existing binding
bound at dist/build/tmp-32182/System/FilePath/Find.hs:264:44
dist/build/tmp-32182/System/FilePath/Find.hs:267:26: Warning:
This binding for `depth' shadows the existing binding
defined at dist/build/tmp-32182/System/FilePath/Find.hs:188:1
dist/build/tmp-32182/System/FilePath/Find.hs:272:18: Warning:
This binding for `state' shadows the existing binding
bound at dist/build/tmp-32182/System/FilePath/Find.hs:264:38
dist/build/tmp-32182/System/FilePath/Find.hs:272:28: Warning:
This binding for `depth' shadows the existing binding
defined at dist/build/tmp-32182/System/FilePath/Find.hs:188:1
dist/build/tmp-32182/System/FilePath/Find.hs:275:53: Warning:
This binding for `state' shadows the existing binding
bound at dist/build/tmp-32182/System/FilePath/Find.hs:272:18
dist/build/tmp-32182/System/FilePath/Find.hs:277:25: Warning:
This binding for `path' shadows the existing binding
bound at dist/build/tmp-32182/System/FilePath/Find.hs:264:44
Haddock coverage:
100% ( 6 / 6) in 'System.FilePath.Manip'
100% ( 7 / 7) in 'System.FilePath.GlobPattern'
100% ( 2 / 2) in 'System.FilePath.Glob'
63% ( 38 / 60) in 'System.FilePath.Find'
Warning: System.FilePath.Find: could not find link destinations for:
Control.Monad.Trans.State.Lazy.State Control.Monad.State.Class.get
Documentation created: dist/doc/html/filemanip/index.html
Installing library in
/srv/hackage/var/build/tmp-install/lib/filemanip-0.3.6.2/ghc-7.6.3
Registering filemanip-0.3.6.2...
Installed filemanip-0.3.6.2
Downloading Biobase-0.0.2.1...
Configuring Biobase-0.0.2.1...
Building Biobase-0.0.2.1...
Preprocessing library Biobase-0.0.2.1...
[1 of 5] Compiling Biobase.RNA ( Biobase/RNA.hs, dist/build/Biobase/RNA.o )
[2 of 5] Compiling Biobase.Structure ( Biobase/Structure.hs, dist/build/Biobase/Structure.o )
[3 of 5] Compiling Biobase.Structure.DotBracket ( Biobase/Structure/DotBracket.hs, dist/build/Biobase/Structure/DotBracket.o )
[4 of 5] Compiling Biobase.Structure.Shapes ( Biobase/Structure/Shapes.hs, dist/build/Biobase/Structure/Shapes.o )
[5 of 5] Compiling Biobase.Constants ( Biobase/Constants.hs, dist/build/Biobase/Constants.o )
In-place registering Biobase-0.0.2.1...
Running Haddock for Biobase-0.0.2.1...
Running hscolour for Biobase-0.0.2.1...
Preprocessing library Biobase-0.0.2.1...
Preprocessing library Biobase-0.0.2.1...
Warning: The documentation for the following packages are not installed. No
links will be generated to these packages: rts-1.0
Haddock coverage:
19% ( 6 / 32) in 'Biobase.RNA'
80% ( 4 / 5) in 'Biobase.Structure'
67% ( 2 / 3) in 'Biobase.Structure.DotBracket'
12% ( 1 / 8) in 'Biobase.Structure.Shapes'
67% ( 4 / 6) in 'Biobase.Constants'
Documentation created: dist/doc/html/Biobase/index.html
Installing library in
/srv/hackage/var/build/tmp-install/lib/Biobase-0.0.2.1/ghc-7.6.3
Registering Biobase-0.0.2.1...
Installed Biobase-0.0.2.1
Downloading BiobaseTypes-0.0.2.2...
Configuring BiobaseTypes-0.0.2.2...
Building BiobaseTypes-0.0.2.2...
Preprocessing library BiobaseTypes-0.0.2.2...
[1 of 5] Compiling Biobase.Types.Ring ( Biobase/Types/Ring.hs, dist/build/Biobase/Types/Ring.o )
[2 of 5] Compiling Biobase.Types.Energy ( Biobase/Types/Energy.hs, dist/build/Biobase/Types/Energy.o )
[3 of 5] Compiling Biobase.Types.Score ( Biobase/Types/Score.hs, dist/build/Biobase/Types/Score.o )
Biobase/Types/Score.hs:27:10: Warning:
No explicit method or default declaration for `.^.'
In the instance declaration for `Ring Score'
Biobase/Types/Score.hs:27:10: Warning:
No explicit method or default declaration for `.^^.'
In the instance declaration for `Ring Score'
[4 of 5] Compiling Biobase.Types.Partition ( Biobase/Types/Partition.hs, dist/build/Biobase/Types/Partition.o )
[5 of 5] Compiling Biobase.Types.Convert ( Biobase/Types/Convert.hs, dist/build/Biobase/Types/Convert.o )
In-place registering BiobaseTypes-0.0.2.2...
Running Haddock for BiobaseTypes-0.0.2.2...
Running hscolour for BiobaseTypes-0.0.2.2...
Preprocessing library BiobaseTypes-0.0.2.2...
Preprocessing library BiobaseTypes-0.0.2.2...
Warning: The documentation for the following packages are not installed. No
links will be generated to these packages: rts-1.0
dist/build/tmp-32182/Biobase/Types/Score.hs:27:10: Warning:
No explicit method or default declaration for `.^.'
In the instance declaration for `Ring Score'
dist/build/tmp-32182/Biobase/Types/Score.hs:27:10: Warning:
No explicit method or default declaration for `.^^.'
In the instance declaration for `Ring Score'
Haddock coverage:
100% ( 2 / 2) in 'Biobase.Types.Ring'
67% ( 2 / 3) in 'Biobase.Types.Energy'
67% ( 2 / 3) in 'Biobase.Types.Score'
33% ( 3 / 9) in 'Biobase.Types.Partition'
75% ( 3 / 4) in 'Biobase.Types.Convert'
Documentation created: dist/doc/html/BiobaseTypes/index.html
Installing library in
/srv/hackage/var/build/tmp-install/lib/BiobaseTypes-0.0.2.2/ghc-7.6.3
Registering BiobaseTypes-0.0.2.2...
Installed BiobaseTypes-0.0.2.2
Downloading BiobaseTurner-0.0.2.2...
Configuring BiobaseTurner-0.0.2.2...
Building BiobaseTurner-0.0.2.2...
Preprocessing library BiobaseTurner-0.0.2.2...
[1 of 3] Compiling Biobase.Turner.Tables ( Biobase/Turner/Tables.hs, dist/build/Biobase/Turner/Tables.o )
[2 of 3] Compiling Biobase.Turner.Import ( Biobase/Turner/Import.hs, dist/build/Biobase/Turner/Import.o )
[3 of 3] Compiling Biobase.Turner ( Biobase/Turner.hs, dist/build/Biobase/Turner.o )
In-place registering BiobaseTurner-0.0.2.2...
Running Haddock for BiobaseTurner-0.0.2.2...
Running hscolour for BiobaseTurner-0.0.2.2...
Preprocessing library BiobaseTurner-0.0.2.2...
Preprocessing library BiobaseTurner-0.0.2.2...
Warning: The documentation for the following packages are not installed. No
links will be generated to these packages: rts-1.0, mtl-2.1.2, parsec-3.1.3,
text-0.11.2.3, transformers-0.3.0.0
Haddock coverage:
80% ( 4 / 5) in 'Biobase.Turner.Tables'
100% ( 2 / 2) in 'Biobase.Turner.Import'
29% ( 2 / 7) in 'Biobase.Turner'
Documentation created: dist/doc/html/BiobaseTurner/index.html
Installing library in
/srv/hackage/var/build/tmp-install/lib/BiobaseTurner-0.0.2.2/ghc-7.6.3
Registering BiobaseTurner-0.0.2.2...
Installed BiobaseTurner-0.0.2.2
Downloading BiobaseVienna-0.0.2.3...
Configuring BiobaseVienna-0.0.2.3...
Building BiobaseVienna-0.0.2.3...
Preprocessing library BiobaseVienna-0.0.2.3...
[1 of 9] Compiling Biobase.Vienna ( Biobase/Vienna.hs, dist/build/Biobase/Vienna.o )
[2 of 9] Compiling Biobase.Vienna.Import.Turner ( Biobase/Vienna/Import/Turner.hs, dist/build/Biobase/Vienna/Import/Turner.o )
[3 of 9] Compiling Biobase.Vienna.Import.ViennaPar ( Biobase/Vienna/Import/ViennaPar.hs, dist/build/Biobase/Vienna/Import/ViennaPar.o )
[4 of 9] Compiling Biobase.Vienna.Export.ViennaPar ( Biobase/Vienna/Export/ViennaPar.hs, dist/build/Biobase/Vienna/Export/ViennaPar.o )
[5 of 9] Compiling Biobase.Vienna.Default ( Biobase/Vienna/Default.hs, dist/build/Biobase/Vienna/Default.o )
Loading package ghc-prim ... linking ... done.
Loading package integer-gmp ... linking ... done.
Loading package base ... linking ... done.
Loading package OneTuple-0.2.1 ... linking ... done.
Loading package tuple-0.2.0.1 ... linking ... done.
Loading package array-0.4.0.1 ... linking ... done.
Loading package deepseq-1.3.0.1 ... linking ... done.
Loading package bytestring-0.10.0.2 ... linking ... done.
Loading package filepath-1.3.0.1 ... linking ... done.
Loading package old-locale-1.0.0.5 ... linking ... done.
Loading package time-1.4.0.1 ... linking ... done.
Loading package unix-2.6.0.1 ... linking ... done.
Loading package directory-1.2.0.1 ... linking ... done.
Loading package containers-0.5.0.0 ... linking ... done.
Loading package pretty-1.1.1.0 ... linking ... done.
Loading package template-haskell ... linking ... done.
Loading package file-embed-0.0.6 ... linking ... done.
Loading package primitive-0.3.1 ... linking ... done.
Loading package vector-0.7.1 ... linking ... done.
Loading package BiobaseTypes-0.0.2.2 ... linking ... done.
Loading package PrimitiveArray-0.0.2.2 ... linking ... done.
Loading package Biobase-0.0.2.1 ... linking ... done.
Loading package HsTools-0.0.1.1 ... linking ... done.
Loading package transformers-0.3.0.0 ... linking ... done.
Loading package mtl-2.1.2 ... linking ... done.
Loading package text-0.11.2.3 ... linking ... done.
Loading package parsec-3.1.3 ... linking ... done.
Loading package ParsecTools-0.0.2.0 ... linking ... done.
Loading package unix-compat-0.4.1.1 ... linking ... done.
Loading package filemanip-0.3.6.2 ... linking ... done.
Loading package split-0.1.2.3 ... linking ... done.
Loading package BiobaseTurner-0.0.2.2 ... linking ... done.
[6 of 9] Compiling Biobase.Vienna.Export.ViennaC ( Biobase/Vienna/Export/ViennaC.hs, dist/build/Biobase/Vienna/Export/ViennaC.o )
[7 of 9] Compiling Biobase.Vienna.Modification.NonStandard ( Biobase/Vienna/Modification/NonStandard.hs, dist/build/Biobase/Vienna/Modification/NonStandard.o )
[8 of 9] Compiling Biobase.Vienna.Modification.Temperature ( Biobase/Vienna/Modification/Temperature.hs, dist/build/Biobase/Vienna/Modification/Temperature.o )
Biobase/Vienna/Modification/Temperature.hs:32:15:
Not in scope: `kelvinC0'
Failed to install BiobaseVienna-0.0.2.3
cabal: Error: some packages failed to install:
BiobaseVienna-0.0.2.3 failed during the building phase. The exception was:
ExitFailure 1
RNAFold-0.0.2.1 depends on BiobaseVienna-0.0.2.3 which failed to install.
RNAFoldProgs-0.0.0.3 depends on BiobaseVienna-0.0.2.3 which failed to install.
cmdargs-0.6 failed during the building phase. The exception was:
ExitFailure 1
Test log
No test log was submitted for this report.