Build #3 for RNAlien-1.3.0
| Package | RNAlien-1.3.0 |
|---|
| Install | BuildFailed |
|---|---|
| Docs | NotTried |
| Tests | NotTried |
| Time submitted | 2017-01-20 10:23:55.926742 UTC |
|---|---|
| Compiler | ghc-8.0.1.20161018 |
| OS | linux |
| Arch | x86_64 |
| Dependencies | BlastHTTP-1.2.1, ClustalParser-1.2.0, EntrezHTTP-1.0.3, HTTP-4000.3.4, Taxonomy-1.0.2, ViennaRNAParser-1.3.2, aeson-1.1.0.0, base-4.9.0.0, biocore-0.3.1, biofasta-0.0.3, blastxml-0.3.2, bytestring-0.10.8.1, cassava-0.1.0.1, cmdargs-0.10.14, containers-0.5.7.1, directory-1.2.6.2, edit-distance-0.2.2.1, either-unwrap-1.1, filepath-1.4.1.0, hierarchical-clustering-0.4.6, http-conduit-2.2.3, http-types-0.9.1, hxt-9.3.1.16, matrix-0.3.5.0, network-2.6.3.1, parsec-3.1.11, process-1.4.2.0, pureMD5-2.1.3, random-1.1, text-1.2.2.1, text-metrics-0.2.0, transformers-0.5.2.0, vector-0.12.0.0, base-4.9.0.0, cmdargs-0.10.14, either-unwrap-1.1, base-4.9.0.0, biocore-0.3.1, biofasta-0.0.3, cmdargs-0.10.14, containers-0.5.7.1, directory-1.2.6.2, either-unwrap-1.1, filepath-1.4.1.0, random-1.1, time-1.6.0.1, ViennaRNAParser-1.3.2, base-4.9.0.0, biocore-0.3.1, biofasta-0.0.3, bytestring-0.10.8.1, cassava-0.1.0.1, cmdargs-0.10.14, directory-1.2.6.2, either-unwrap-1.1, filepath-1.4.1.0, process-1.4.2.0, split-0.2.3.1, vector-0.12.0.0, base-4.9.0.0, cmdargs-0.10.14, either-unwrap-1.1, base-4.9.0.0, bytestring-0.10.8.1, cmdargs-0.10.14, either-unwrap-1.1, text-1.2.2.1 |
| Flags | none |
Code Coverage
No Code Coverage was submitted for this report.
Build log
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Resolving dependencies...
Configuring base64-bytestring-1.0.0.1...
Configuring base-compat-0.9.1...
Building base-compat-0.9.1...
Building base64-bytestring-1.0.0.1...
Installed base64-bytestring-1.0.0.1
Configuring byteable-0.1.1...
Building byteable-0.1.1...
Configuring cereal-0.5.4.0...
Installed base-compat-0.9.1
Building cereal-0.5.4.0...
Configuring cmdargs-0.10.14...
Installed byteable-0.1.1
Building cmdargs-0.10.14...
Configuring colour-2.3.3...
Installed cereal-0.5.4.0
Building colour-2.3.3...
Configuring data-default-class-0.1.2.0...
Installed colour-2.3.3
Building data-default-class-0.1.2.0...
Configuring dlist-0.8.0.2...
Installed data-default-class-0.1.2.0
Building dlist-0.8.0.2...
Configuring entropy-0.3.7...
Installed dlist-0.8.0.2
Configuring either-unwrap-1.1...
Installed cmdargs-0.10.14
Building entropy-0.3.7...
Building either-unwrap-1.1...
Configuring fgl-5.5.3.0...
Installed either-unwrap-1.1
Building fgl-5.5.3.0...
Configuring hourglass-0.2.10...
Installed entropy-0.3.7
Building hourglass-0.2.10...
Configuring hierarchical-clustering-0.4.6...
Installed fgl-5.5.3.0
Configuring hxt-charproperties-9.2.0.1...
Installed hourglass-0.2.10
Building hierarchical-clustering-0.4.6...
Building hxt-charproperties-9.2.0.1...
Configuring integer-logarithms-1...
Installed hierarchical-clustering-0.4.6
Building integer-logarithms-1...
Configuring loop-0.3.0...
Installed integer-logarithms-1
Building loop-0.3.0...
Configuring memory-0.14.1...
Installed hxt-charproperties-9.2.0.1
Configuring mtl-2.2.1...
Installed loop-0.3.0
Building memory-0.14.1...
Building mtl-2.2.1...
Configuring network-2.6.3.1...
Installed mtl-2.2.1
Configuring old-locale-1.0.0.7...
Installed memory-0.14.1
Building network-2.6.3.1...
Building old-locale-1.0.0.7...
Configuring parallel-3.2.1.0...
Installed old-locale-1.0.0.7
Building parallel-3.2.1.0...
Configuring primitive-0.6.2.0...
Installed parallel-3.2.1.0
Building primitive-0.6.2.0...
Configuring random-1.1...
Installed network-2.6.3.1
Building random-1.1...
Configuring split-0.2.3.1...
Installed random-1.1
Configuring stm-2.4.4.1...
Installed primitive-0.6.2.0
Building split-0.2.3.1...
Building stm-2.4.4.1...
Configuring text-1.2.2.1...
Installed split-0.2.3.1
Building text-1.2.2.1...
Configuring time-locale-compat-0.1.1.3...
Installed stm-2.4.4.1
Building time-locale-compat-0.1.1.3...
Configuring transformers-compat-0.5.1.4...
Installed time-locale-compat-0.1.1.3
Building transformers-compat-0.5.1.4...
Configuring zlib-0.6.1.2...
Installed transformers-compat-0.5.1.4
Building zlib-0.6.1.2...
Installed zlib-0.6.1.2
Configuring hxt-unicode-9.0.2.4...
Building hxt-unicode-9.0.2.4...
Configuring asn1-types-0.3.2...
Installed hxt-unicode-9.0.2.4
Building asn1-types-0.3.2...
Configuring pem-0.2.2...
Installed text-1.2.2.1
Building pem-0.2.2...
Configuring edit-distance-0.2.2.1...
Installed asn1-types-0.3.2
Building edit-distance-0.2.2.1...
Configuring socks-0.5.5...
Installed pem-0.2.2
Building socks-0.5.5...
Configuring cryptonite-0.21...
Installed edit-distance-0.2.2.1
Building cryptonite-0.21...
Configuring async-2.1.1...
Installed socks-0.5.5
Building async-2.1.1...
Configuring vector-0.12.0.0...
Installed async-2.1.1
Building vector-0.12.0.0...
Configuring exceptions-0.8.3...
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Building exceptions-0.8.3...
Configuring mmorph-1.0.9...
Installed exceptions-0.8.3
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Configuring transformers-base-0.4.4...
Installed cryptonite-0.21
Building transformers-base-0.4.4...
Configuring tagged-0.8.5...
Installed mmorph-1.0.9
Building tagged-0.8.5...
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Configuring blaze-builder-0.4.0.2...
Building blaze-builder-0.4.0.2...
Configuring hashable-1.2.5.0...
Installed tagged-0.8.5
Building hashable-1.2.5.0...
Configuring mime-types-0.1.0.7...
Installed blaze-builder-0.4.0.2
Building mime-types-0.1.0.7...
Configuring polyparse-1.12...
Installed hashable-1.2.5.0
Building polyparse-1.12...
Configuring parsec-3.1.11...
Installed mime-types-0.1.0.7
Building parsec-3.1.11...
Configuring system-filepath-0.4.13.4...
Installed polyparse-1.12
Configuring text-metrics-0.2.0...
Installed parsec-3.1.11
Building text-metrics-0.2.0...
Building system-filepath-0.4.13.4...
Configuring asn1-encoding-0.9.4...
Installed text-metrics-0.2.0
Building asn1-encoding-0.9.4...
Configuring wl-pprint-text-1.1.0.4...
Installed system-filepath-0.4.13.4
Building wl-pprint-text-1.1.0.4...
Configuring matrix-0.3.5.0...
Installed asn1-encoding-0.9.4
Configuring tagsoup-0.14...
Installed wl-pprint-text-1.1.0.4
Building matrix-0.3.5.0...
Building tagsoup-0.14...
Configuring temporary-1.2.0.4...
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Configuring monad-control-1.0.1.0...
Installed matrix-0.3.5.0
Installed temporary-1.2.0.4
Configuring cookie-0.4.2.1...
Building monad-control-1.0.1.0...
Building cookie-0.4.2.1...
Configuring crypto-api-0.13.2...
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Configuring streaming-commons-0.1.16...
Installed cookie-0.4.2.1
Building crypto-api-0.13.2...
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Configuring case-insensitive-1.2.0.7...
Installed crypto-api-0.13.2
Building case-insensitive-1.2.0.7...
Configuring scientific-0.3.4.10...
Installed streaming-commons-0.1.16
Building scientific-0.3.4.10...
Configuring unordered-containers-0.2.7.2...
Installed case-insensitive-1.2.0.7
Building unordered-containers-0.2.7.2...
Configuring uuid-types-1.0.3...
Installed scientific-0.3.4.10
Building uuid-types-1.0.3...
Configuring ClustalParser-1.2.0...
Installed uuid-types-1.0.3
Building ClustalParser-1.2.0...
Configuring ParsecTools-0.0.2.0...
Installed unordered-containers-0.2.7.2
Building ParsecTools-0.0.2.0...
Configuring hxt-regex-xmlschema-9.2.0.3...
Installed ParsecTools-0.0.2.0
Building hxt-regex-xmlschema-9.2.0.3...
Configuring network-uri-2.6.1.0...
Installed ClustalParser-1.2.0
Building network-uri-2.6.1.0...
Configuring stringable-0.1.3...
Installed hxt-regex-xmlschema-9.2.0.3
Building stringable-0.1.3...
Configuring asn1-parse-0.9.4...
Installed network-uri-2.6.1.0
Building asn1-parse-0.9.4...
Configuring graphviz-2999.18.1.2...
Installed stringable-0.1.3
Installed asn1-parse-0.9.4
Configuring lifted-base-0.2.3.8...
Building graphviz-2999.18.1.2...
Building lifted-base-0.2.3.8...
Configuring pureMD5-2.1.3...
Installed lifted-base-0.2.3.8
Building pureMD5-2.1.3...
Configuring http-types-0.9.1...
Installed pureMD5-2.1.3
Building http-types-0.9.1...
Configuring attoparsec-0.13.1.0...
Installed http-types-0.9.1
Building attoparsec-0.13.1.0...
Configuring ViennaRNAParser-1.3.2...
Installed attoparsec-0.13.1.0
Building ViennaRNAParser-1.3.2...
Configuring HTTP-4000.3.4...
Installed ViennaRNAParser-1.3.2
Building HTTP-4000.3.4...
Configuring hxt-9.3.1.16...
Installed HTTP-4000.3.4
Building hxt-9.3.1.16...
Configuring biocore-0.3.1...
Installed graphviz-2999.18.1.2
Building biocore-0.3.1...
Configuring x509-1.6.5...
Installed biocore-0.3.1
Building x509-1.6.5...
Installed x509-1.6.5
Configuring resourcet-1.1.9...
Building resourcet-1.1.9...
Configuring http-client-0.5.5...
Installed resourcet-1.1.9
Building http-client-0.5.5...
Configuring aeson-1.1.0.0...
Installed hxt-9.3.1.16
Building aeson-1.1.0.0...
Configuring cassava-0.1.0.1...
Installed http-client-0.5.5
Building cassava-0.1.0.1...
Configuring blastxml-0.3.2...
Installed cassava-0.1.0.1
Building blastxml-0.3.2...
Configuring biofasta-0.0.3...
Installed blastxml-0.3.2
Building biofasta-0.0.3...
Configuring x509-store-1.6.2...
Installed biofasta-0.0.3
Building x509-store-1.6.2...
Configuring conduit-1.2.8...
Installed x509-store-1.6.2
Building conduit-1.2.8...
Installed aeson-1.1.0.0
Configuring x509-system-1.6.4...
Building x509-system-1.6.4...
Configuring x509-validation-1.6.5...
Installed conduit-1.2.8
Installed x509-system-1.6.4
Configuring Taxonomy-1.0.2...
Building x509-validation-1.6.5...
Building Taxonomy-1.0.2...
Configuring conduit-extra-1.1.15...
Installed x509-validation-1.6.5
Building conduit-extra-1.1.15...
Installed Taxonomy-1.0.2
Configuring tls-1.3.9...
Building tls-1.3.9...
Installed conduit-extra-1.1.15
Installed tls-1.3.9
Configuring connection-0.2.6...
Building connection-0.2.6...
Installed connection-0.2.6
Configuring http-client-tls-0.3.3.1...
Building http-client-tls-0.3.3.1...
Installed http-client-tls-0.3.3.1
Configuring http-conduit-2.2.3...
Building http-conduit-2.2.3...
Installed http-conduit-2.2.3
Configuring BlastHTTP-1.2.1...
Configuring EntrezHTTP-1.0.3...
Building BlastHTTP-1.2.1...
Building EntrezHTTP-1.0.3...
Installed BlastHTTP-1.2.1
Installed EntrezHTTP-1.0.3
Configuring RNAlien-1.3.0...
Building RNAlien-1.3.0...
Failed to install RNAlien-1.3.0
Build log ( /home/builder/.cabal/logs/RNAlien-1.3.0.log ):
cabal: Entering directory '/tmp/cabal-tmp-30630/RNAlien-1.3.0'
Configuring RNAlien-1.3.0...
Building RNAlien-1.3.0...
Preprocessing library RNAlien-1.3.0...
[1 of 4] Compiling Bio.RNAlienData ( src/Bio/RNAlienData.hs, dist/build/Bio/RNAlienData.o )
[2 of 4] Compiling Bio.RNAcentralHTTP ( src/Bio/RNAcentralHTTP.hs, dist/build/Bio/RNAcentralHTTP.o )
[3 of 4] Compiling Bio.InfernalParser ( src/Bio/InfernalParser.hs, dist/build/Bio/InfernalParser.o )
[4 of 4] Compiling Bio.RNAlienLibrary ( src/Bio/RNAlienLibrary.hs, dist/build/Bio/RNAlienLibrary.o )
src/Bio/RNAlienLibrary.hs:1050:59: error:
• Couldn't match expected type ‘L.ByteString
-> Either String (V.Vector [String])’
with actual type ‘Either String (V.Vector a0)’
• The function ‘decodeWith’ is applied to three arguments,
but its type ‘DecodeOptions
-> L.ByteString -> Either String (V.Vector a0)’
has only two
In the first argument of ‘fromRight’, namely
‘(decodeWith myOptions NoHeader (L.pack singlespaceCMcompare) ::
Either String (V.Vector [String]))’
In the first argument of ‘V.toList’, namely
‘(fromRight
(decodeWith myOptions NoHeader (L.pack singlespaceCMcompare) ::
Either String (V.Vector [String])))’
src/Bio/RNAlienLibrary.hs:1050:80: error:
Data constructor not in scope: NoHeader :: L.ByteString
cabal: Leaving directory '/tmp/cabal-tmp-30630/RNAlien-1.3.0'
cabal: Error: some packages failed to install:
RNAlien-1.3.0 failed during the building phase. The exception was:
ExitFailure 1
Test log
No test log was submitted for this report.