name:                Taxonomy
version:             2.0.0
synopsis:            Libary for parsing, processing and vizualization of taxonomy data
description:         Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation
                     for the NCBI (National Center for Biotechnology Information) Taxonomy datasources.
                     .
                     It can utilize information from the <http://www.ncbi.nlm.nih.gov/taxonomy Entrez> REST interface via <https://github.com/eggzilla/EntrezHTTP EntrezHTTP>,
                     as well as from the files of the Taxonomy database <ftp://ftp.ncbi.nih.gov/pub/taxonomy/ dump>.
                     .
                     Input data is parsed into a FGL based datastructure, which enables a wealth of processing
                     steps like node distances, retrieval of parent nodes or extraction of
                     subtrees.
                     .
                     Trees can be visualised via dot-format (<http://graphviz.org/ graphviz>)
                     .
                     <<http://www.tbi.univie.ac.at/~egg/taxonomy.svg dot>>
                     .
                     or via json-format (<http://d3js.org/d3js>).
                     .
                     The <https://hackage.haskell.org/package/TaxonomyTools TaxonomyTools> package contains tools based on this package.

license:             GPL-3
license-file:        LICENSE
author:              Florian Eggenhofer
maintainer:          egg@informatik.uni-freiburg.de
-- copyright:
category:            Bioinformatics
build-type:          Simple
cabal-version:       >=1.10.0
Tested-With: GHC == 8.4.4, GHC == 8.6.5
Extra-Source-Files:
        README.md ChangeLog.md


source-repository head
  type:     git
  location: https://github.com/eggzilla/Taxonomy

source-repository this
  type:     git
  location: https://github.com/eggzilla/Taxonomy/tree/v2.0.0
  tag:      v2.0.0

Library
  ghc-options:         -Wall -fno-warn-unused-do-bind
  default-language:    Haskell2010
  build-depends:       base >=4.5 && <5, parsec, either-unwrap, fgl>=5.5.4.0, text, graphviz>=2999.12.0.4, bytestring, aeson, vector
  Hs-source-dirs:      .
  Exposed-modules:     Biobase.Taxonomy.Types
                       Biobase.Taxonomy.Import
                       Biobase.Taxonomy.Visualization
                       Biobase.Taxonomy.Utils
                       Biobase.Taxonomy