#ifndef VIENNA_RNA_PACKAGE_READ_EPARS_H #define VIENNA_RNA_PACKAGE_READ_EPARS_H /** * @file read_epars.h * @ingroup energy_parameters * @brief Read and write energy parameter files */ /** * @addtogroup energy_parameters_rw * @brief Read and Write energy parameter sets from and to text files * * A default set of parameters, identical to the one described in * @cite mathews:2004 and @cite turner:2010, is compiled into the library. * * @{ * @ingroup energy_parameters_rw */ /** * @brief * */ enum parset { UNKNOWN= -1, QUIT, S, S_H, HP, HP_H, B, B_H, IL, IL_H, MMH, MMH_H, MMI, MMI_H, MMI1N, MMI1N_H, MMI23, MMI23_H, MMM, MMM_H, MME, MME_H, D5, D5_H, D3, D3_H, INT11, INT11_H, INT21, INT21_H, INT22, INT22_H, ML, TL, TRI, HEX, NIN, MISC}; /** * @brief Read energy parameters from a file * * @param fname The path to the file containing the energy parameters */ void read_parameter_file(const char fname[]); /** * @brief Write energy parameters to a file * * @param fname A filename (path) for the file where the current energy parameters will be written to */ void write_parameter_file(const char fname[]); /** * @brief * */ enum parset gettype(const char *ident); /** * @brief * */ char *settype(enum parset s); /** * @} */ #endif