ViennaRNAParser-1.3.3: Libary for parsing ViennaRNA package output

Index

alignmentConsensusDotBracketBio.RNAalifoldData, Bio.RNAalifoldParser, Bio.ViennaRNAParser
alignmentConsensusEnergyCovarianceContributionsBio.RNAalifoldData, Bio.RNAalifoldParser, Bio.ViennaRNAParser
alignmentConsensusInitialMinimumFreeEnergyBio.RNAalifoldData, Bio.RNAalifoldParser, Bio.ViennaRNAParser
alignmentConsensusMinimumFreeEnergyBio.RNAalifoldData, Bio.RNAalifoldParser, Bio.ViennaRNAParser
alignmentConsensusSequenceBio.RNAalifoldData, Bio.RNAalifoldParser, Bio.ViennaRNAParser
backgroundModelBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
centroidDistanceBio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser
centroidFoldingEnergyBio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser
centroidStructureBio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser
coarseFoldingEnergyBio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser
coarseStructureBio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser
coFoldingEnergyBio.RNAcofoldData, Bio.RNAcofoldParser, Bio.ViennaRNAParser
coFoldSecondaryStructure1Bio.RNAcofoldData, Bio.RNAcofoldParser, Bio.ViennaRNAParser
coFoldSecondaryStructure2Bio.RNAcofoldData, Bio.RNAcofoldParser, Bio.ViennaRNAParser
coFoldSequence1Bio.RNAcofoldData, Bio.RNAcofoldParser, Bio.ViennaRNAParser
coFoldSequence2Bio.RNAcofoldData, Bio.RNAcofoldParser, Bio.ViennaRNAParser
columnNumberBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
combinationsPairBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
consensusDotBracketBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
consensusMinimumFreeEnergyBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
consensusSequenceBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
covarianceContributionBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
decisionModelBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
dotBracketBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
duplexEnergyBio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser
duplexEnergyWithoutAccessiblityBio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser
endBio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser
energyContributionBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
ensembleDiversityBio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser
foldingEnergyBio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser
foldSecondaryStructureBio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser
foldSequenceBio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser
frameBio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser
fromBio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser
gcContentBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
headerBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
hitLengthBio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser
hssBio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser
meaDistanceBio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser
meaFoldingEnergyBio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser
meaFoldSequenceBio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser
meanPairwiseIdentityBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
meanSingleSequenceMinimumFreeEnergyBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
meanZScoreBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
meaSequenceIdentifierBio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser
meaStructureBio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser
mfefoldingEnergyBio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser
mfeFreqBio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser
mfeStructureBio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser
minimumFreeEnergyBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
nameBio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser
parseNucleotideAlignmentEntryBio.ViennaRNAParserLibrary
parseNucleotideSequenceBio.ViennaRNAParserLibrary
parseProteinAlignmentEntryBio.ViennaRNAParserLibrary
parseProteinSequenceBio.ViennaRNAParserLibrary
parseRNAalifoldBio.RNAalifoldParser, Bio.ViennaRNAParser
parseRNAcodeBio.RNAcodeParser, Bio.ViennaRNAParser
parseRNAcodeTabularBio.RNAcodeParser, Bio.ViennaRNAParser
parseRNAcofoldBio.RNAcofoldParser, Bio.ViennaRNAParser
parseRNAdistanceBio.RNAdistanceParser, Bio.ViennaRNAParser
parseRNAfoldBio.RNAfoldParser, Bio.ViennaRNAParser
parseRNAMEAfoldBio.RNAfoldParser, Bio.ViennaRNAParser
parseRNAplexBio.RNAplexParser, Bio.ViennaRNAParser
parseRNAupBio.RNAupParser, Bio.ViennaRNAParser
parseRNAzBio.RNAzParser, Bio.ViennaRNAParser
plexSecondaryStructureBio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser
predictionBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
prefilterEnergyBio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser
prefilterStartBio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser
prefilterStopBio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser
pvalueBio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser
queryAccessiblityBio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser
queryDuplexBeginBio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser
queryDuplexEndBio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser
queryIdentifierBio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser
rcAlignmentNumberBio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser
rcBigOmegaBio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser
rcDeltaBio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser
rcSampleNumberBio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser
rcSmallOmegaBio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser
rcStopPenaltyBio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser
rcTimeBio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser
readDoubleBio.ViennaRNAParserLibrary
readingDirectionBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
readIntBio.ViennaRNAParserLibrary
readRNAalifoldBio.RNAalifoldParser, Bio.ViennaRNAParser
readRNAcodeBio.RNAcodeParser, Bio.ViennaRNAParser
readRNAcodeTabularBio.RNAcodeParser, Bio.ViennaRNAParser
readRNAcofoldBio.RNAcofoldParser, Bio.ViennaRNAParser
readRNAdistanceBio.RNAdistanceParser, Bio.ViennaRNAParser
readRNAfoldBio.RNAfoldParser, Bio.ViennaRNAParser
readRNAMEAfoldBio.RNAfoldParser, Bio.ViennaRNAParser
readRNAplexBio.RNAplexParser, Bio.ViennaRNAParser
readRNAupBio.RNAupParser, Bio.ViennaRNAParser
readRNAzBio.RNAzParser, Bio.ViennaRNAParser
resultSequenceBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
RNAalifold 
1 (Type/Class)Bio.RNAalifoldData, Bio.RNAalifoldParser, Bio.ViennaRNAParser
2 (Data Constructor)Bio.RNAalifoldData, Bio.RNAalifoldParser, Bio.ViennaRNAParser
RNAcode 
1 (Type/Class)Bio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser
2 (Data Constructor)Bio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser
RNAcodeHit 
1 (Type/Class)Bio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser
2 (Data Constructor)Bio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser
rnacodeHitsBio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser
RNAcofold 
1 (Type/Class)Bio.RNAcofoldData, Bio.RNAcofoldParser, Bio.ViennaRNAParser
2 (Data Constructor)Bio.RNAcofoldData, Bio.RNAcofoldParser, Bio.ViennaRNAParser
RNAdistance 
1 (Type/Class)Bio.RNAdistanceData, Bio.RNAdistanceParser, Bio.ViennaRNAParser
2 (Data Constructor)Bio.RNAdistanceData, Bio.RNAdistanceParser, Bio.ViennaRNAParser
RNAfold 
1 (Type/Class)Bio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser
2 (Data Constructor)Bio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser
RNAfoldMEA 
1 (Type/Class)Bio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser
2 (Data Constructor)Bio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser
RNAplexInteraction 
1 (Type/Class)Bio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser
2 (Data Constructor)Bio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser
RNAupInteraction 
1 (Type/Class)Bio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser
2 (Data Constructor)Bio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser
RNAupInteractionRegion 
1 (Type/Class)Bio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser
2 (Data Constructor)Bio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser
RNAz 
1 (Type/Class)Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
2 (Data Constructor)Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
RNAzConsensus 
1 (Type/Class)Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
2 (Data Constructor)Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
rnazConsensusBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
RNAzResult 
1 (Type/Class)Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
2 (Data Constructor)Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
rnazResultsBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
scoreBio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser
secondaryStructureDistanceBio.RNAdistanceData, Bio.RNAdistanceParser, Bio.ViennaRNAParser
sequenceIdentifierBio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser
sequenceNumberBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
shannonEntropyBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
startBio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser
strandBio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser
structureConservationIndexBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
svmDecisionValueBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
svmRNAClassProbabilityBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
systemRNAalifoldBio.RNAalifoldParser, Bio.ViennaRNAParser
systemRNAcodeBio.RNAcodeParser, Bio.ViennaRNAParser
systemRNAcofoldBio.RNAcofoldParser, Bio.ViennaRNAParser
systemRNAfoldBio.RNAfoldParser, Bio.ViennaRNAParser
systemRNAfoldOptionsBio.RNAfoldParser, Bio.ViennaRNAParser
systemRNAzBio.RNAzParser, Bio.ViennaRNAParser
targetAccessibilityBio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser
targetDuplexBeginBio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser
targetDuplexEndBio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser
targetIdentifierBio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser
toBio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser
upDuplexEnergyBio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser
upDuplexEnergyWithoutAccessiblityBio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser
upInteractionsBio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser
upOutputFileNameBio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser
upQueryAccessiblityBio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser
upQueryDuplexBeginBio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser
upQueryDuplexEndBio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser
upQueryIdentifierBio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser
upQuerySequenceBio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser
upSecondaryStructureBio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser
upTargetAccessibilityBio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser
upTargetDuplexBeginBio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser
upTargetDuplexEndBio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser
upTargetIdentifierBio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser
upTargetSequenceBio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser
versionBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
zScoreBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser
zscoreCalculationApproachBio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser