Resolving dependencies... Configuring cmdargs-0.10.5... Building cmdargs-0.10.5... Preprocessing library cmdargs-0.10.5... [ 1 of 25] Compiling System.Console.CmdArgs.Implicit.Ann ( System/Console/CmdArgs/Implicit/Ann.hs, dist/build/System/Console/CmdArgs/Implicit/Ann.o ) [ 2 of 25] Compiling System.Console.CmdArgs.Implicit.UI ( System/Console/CmdArgs/Implicit/UI.hs, dist/build/System/Console/CmdArgs/Implicit/UI.o ) [ 3 of 25] Compiling System.Console.CmdArgs.Verbosity ( System/Console/CmdArgs/Verbosity.hs, dist/build/System/Console/CmdArgs/Verbosity.o ) [ 4 of 25] Compiling System.Console.CmdArgs.Implicit.Type ( System/Console/CmdArgs/Implicit/Type.hs, dist/build/System/Console/CmdArgs/Implicit/Type.o ) [ 5 of 25] Compiling System.Console.CmdArgs.Explicit.SplitJoin ( System/Console/CmdArgs/Explicit/SplitJoin.hs, dist/build/System/Console/CmdArgs/Explicit/SplitJoin.o ) [ 6 of 25] Compiling System.Console.CmdArgs.Explicit.ExpandArgsAt ( System/Console/CmdArgs/Explicit/ExpandArgsAt.hs, dist/build/System/Console/CmdArgs/Explicit/ExpandArgsAt.o ) [ 7 of 25] Compiling System.Console.CmdArgs.Explicit.Type ( System/Console/CmdArgs/Explicit/Type.hs, dist/build/System/Console/CmdArgs/Explicit/Type.o ) [ 8 of 25] Compiling System.Console.CmdArgs.Explicit.Process ( System/Console/CmdArgs/Explicit/Process.hs, dist/build/System/Console/CmdArgs/Explicit/Process.o ) [ 9 of 25] Compiling System.Console.CmdArgs.Explicit.Complete ( System/Console/CmdArgs/Explicit/Complete.hs, dist/build/System/Console/CmdArgs/Explicit/Complete.o ) [10 of 25] Compiling System.Console.CmdArgs.Helper ( System/Console/CmdArgs/Helper.hs, dist/build/System/Console/CmdArgs/Helper.o ) [11 of 25] Compiling System.Console.CmdArgs.Default ( System/Console/CmdArgs/Default.hs, dist/build/System/Console/CmdArgs/Default.o ) [12 of 25] Compiling System.Console.CmdArgs.Text ( System/Console/CmdArgs/Text.hs, dist/build/System/Console/CmdArgs/Text.o ) [13 of 25] Compiling System.Console.CmdArgs.Explicit.Help ( System/Console/CmdArgs/Explicit/Help.hs, dist/build/System/Console/CmdArgs/Explicit/Help.o ) [14 of 25] Compiling System.Console.CmdArgs.Explicit ( System/Console/CmdArgs/Explicit.hs, dist/build/System/Console/CmdArgs/Explicit.o ) [15 of 25] Compiling System.Console.CmdArgs.GetOpt ( System/Console/CmdArgs/GetOpt.hs, dist/build/System/Console/CmdArgs/GetOpt.o ) [16 of 25] Compiling Data.Generics.Any ( Data/Generics/Any.hs, dist/build/Data/Generics/Any.o ) Data/Generics/Any.hs:65:17: Warning: In the use of `tyConString' (imported from Data.Data, but defined in Data.Typeable.Internal): Deprecated: "renamed to tyConName; tyConModule and tyConPackage are also available." [17 of 25] Compiling Data.Generics.Any.Prelude ( Data/Generics/Any/Prelude.hs, dist/build/Data/Generics/Any/Prelude.o ) [18 of 25] Compiling System.Console.CmdArgs.Implicit.Reader ( System/Console/CmdArgs/Implicit/Reader.hs, dist/build/System/Console/CmdArgs/Implicit/Reader.o ) [19 of 25] Compiling System.Console.CmdArgs.Annotate ( System/Console/CmdArgs/Annotate.hs, dist/build/System/Console/CmdArgs/Annotate.o ) [20 of 25] Compiling System.Console.CmdArgs.Implicit.Local ( System/Console/CmdArgs/Implicit/Local.hs, dist/build/System/Console/CmdArgs/Implicit/Local.o ) [21 of 25] Compiling System.Console.CmdArgs.Implicit.Reform ( System/Console/CmdArgs/Implicit/Reform.hs, dist/build/System/Console/CmdArgs/Implicit/Reform.o ) [22 of 25] Compiling System.Console.CmdArgs.Implicit.Global ( System/Console/CmdArgs/Implicit/Global.hs, dist/build/System/Console/CmdArgs/Implicit/Global.o ) [23 of 25] Compiling System.Console.CmdArgs.Implicit ( System/Console/CmdArgs/Implicit.hs, dist/build/System/Console/CmdArgs/Implicit.o ) [24 of 25] Compiling System.Console.CmdArgs ( System/Console/CmdArgs.hs, dist/build/System/Console/CmdArgs.o ) [25 of 25] Compiling System.Console.CmdArgs.Quote ( System/Console/CmdArgs/Quote.hs, dist/build/System/Console/CmdArgs/Quote.o ) In-place registering cmdargs-0.10.5... Running Haddock for cmdargs-0.10.5... Running hscolour for cmdargs-0.10.5... Preprocessing library cmdargs-0.10.5... Preprocessing library cmdargs-0.10.5... Warning: The documentation for the following packages are not installed. No links will be generated to these packages: rts-1.0, transformers-0.3.0.0 dist/build/tmp-1151/Data/Generics/Any.hs:65:17: Warning: In the use of `tyConString' (imported from Data.Data, but defined in Data.Typeable.Internal): Deprecated: "renamed to tyConName; tyConModule and tyConPackage are also available." Haddock coverage: 50% ( 1 / 2) in 'System.Console.CmdArgs.Implicit.Ann' 100% ( 21 / 21) in 'System.Console.CmdArgs.Implicit.UI' 100% ( 8 / 8) in 'System.Console.CmdArgs.Verbosity' 25% ( 2 / 8) in 'System.Console.CmdArgs.Implicit.Type' 67% ( 2 / 3) in 'System.Console.CmdArgs.Explicit.SplitJoin' 50% ( 1 / 2) in 'System.Console.CmdArgs.Explicit.ExpandArgsAt' 86% ( 24 / 28) in 'System.Console.CmdArgs.Explicit.Type' 50% ( 1 / 2) in 'System.Console.CmdArgs.Explicit.Process' 60% ( 3 / 5) in 'System.Console.CmdArgs.Explicit.Complete' 100% ( 8 / 8) in 'System.Console.CmdArgs.Helper' 100% ( 2 / 2) in 'System.Console.CmdArgs.Default' 100% ( 5 / 5) in 'System.Console.CmdArgs.Text' 67% ( 2 / 3) in 'System.Console.CmdArgs.Explicit.Help' 93% ( 43 / 46) in 'System.Console.CmdArgs.Explicit' 100% ( 8 / 8) in 'System.Console.CmdArgs.GetOpt' 4% ( 1 / 26) in 'Data.Generics.Any' 0% ( 0 / 20) in 'Data.Generics.Any.Prelude' 0% ( 0 / 3) in 'System.Console.CmdArgs.Implicit.Reader' 100% ( 17 / 17) in 'System.Console.CmdArgs.Annotate' 9% ( 1 / 11) in 'System.Console.CmdArgs.Implicit.Local' 0% ( 0 / 2) in 'System.Console.CmdArgs.Implicit.Reform' 0% ( 0 / 2) in 'System.Console.CmdArgs.Implicit.Global' 100% ( 50 / 50) in 'System.Console.CmdArgs.Implicit' 100% ( 9 / 9) in 'System.Console.CmdArgs.Quote' 100% ( 2 / 2) in 'System.Console.CmdArgs' Warning: System.Console.CmdArgs.Implicit: could not find link destinations for: System.Console.CmdArgs.Implicit.Type.CmdArgsPrivate GHC.IO.Handle.Types.Handle__ Documentation created: dist/doc/html/cmdargs/index.html Installing library in /srv/hackage/var/build/tmp-install/lib/cmdargs-0.10.5/ghc-7.6.3 Registering cmdargs-0.10.5... Installed cmdargs-0.10.5 Configuring hashable-1.2.1.0... Building hashable-1.2.1.0... Preprocessing library hashable-1.2.1.0... [1 of 3] Compiling Data.Hashable.Class ( Data/Hashable/Class.hs, dist/build/Data/Hashable/Class.o ) [2 of 3] Compiling Data.Hashable.Generic ( Data/Hashable/Generic.hs, dist/build/Data/Hashable/Generic.o ) [3 of 3] Compiling Data.Hashable ( Data/Hashable.hs, dist/build/Data/Hashable.o ) In-place registering hashable-1.2.1.0... Running Haddock for hashable-1.2.1.0... Running hscolour for hashable-1.2.1.0... Preprocessing library hashable-1.2.1.0... Preprocessing library hashable-1.2.1.0... Warning: The documentation for the following packages are not installed. No links will be generated to these packages: rts-1.0, text-0.11.2.3 Haddock coverage: 100% ( 11 / 11) in 'Data.Hashable.Class' 100% ( 1 / 1) in 'Data.Hashable.Generic' 100% ( 22 / 22) in 'Data.Hashable' Warning: Data.Hashable: could not find link destinations for: Data.Text.Internal.Text Data.Text.Lazy.Internal.Text Data.Hashable.Class.GHashable Documentation created: dist/doc/html/hashable/index.html Installing library in /srv/hackage/var/build/tmp-install/lib/hashable-1.2.1.0/ghc-7.6.3 Registering hashable-1.2.1.0... Installed hashable-1.2.1.0 Configuring system-filepath-0.4.8... Building system-filepath-0.4.8... Preprocessing library system-filepath-0.4.8... [1 of 4] Compiling Filesystem.Path.Internal ( lib/Filesystem/Path/Internal.hs, dist/build/Filesystem/Path/Internal.o ) [2 of 4] Compiling Filesystem.Path ( lib/Filesystem/Path.hs, dist/build/Filesystem/Path.o ) [3 of 4] Compiling Filesystem.Path.Rules ( lib/Filesystem/Path/Rules.hs, dist/build/Filesystem/Path/Rules.o ) [4 of 4] Compiling Filesystem.Path.CurrentOS ( lib/Filesystem/Path/CurrentOS.hs, dist/build/Filesystem/Path/CurrentOS.o ) In-place registering system-filepath-0.4.8... Running Haddock for system-filepath-0.4.8... Running hscolour for system-filepath-0.4.8... Preprocessing library system-filepath-0.4.8... Preprocessing library system-filepath-0.4.8... Warning: The documentation for the following packages are not installed. No links will be generated to these packages: rts-1.0, text-0.11.2.3 Haddock coverage: 9% ( 2 / 23) in 'Filesystem.Path.Internal' 97% ( 33 / 34) in 'Filesystem.Path' 94% ( 17 / 18) in 'Filesystem.Path.Rules' 92% ( 12 / 13) in 'Filesystem.Path.CurrentOS' Warning: Filesystem.Path: could not find link destinations for: Data.Text.Internal.Text Warning: Filesystem.Path.Rules: could not find link destinations for: Data.Text.Internal.Text Warning: Filesystem.Path.CurrentOS: could not find link destinations for: Data.Text.Internal.Text Documentation created: dist/doc/html/system-filepath/index.html Installing library in /srv/hackage/var/build/tmp-install/lib/system-filepath-0.4.8/ghc-7.6.3 Registering system-filepath-0.4.8... Installed system-filepath-0.4.8 Configuring unordered-containers-0.2.3.3... Building unordered-containers-0.2.3.3... Preprocessing library unordered-containers-0.2.3.3... [1 of 8] Compiling Data.HashMap.UnsafeShift ( Data/HashMap/UnsafeShift.hs, dist/build/Data/HashMap/UnsafeShift.o ) [2 of 8] Compiling Data.HashMap.PopCount ( Data/HashMap/PopCount.hs, dist/build/Data/HashMap/PopCount.o ) [3 of 8] Compiling Data.HashMap.Unsafe ( Data/HashMap/Unsafe.hs, dist/build/Data/HashMap/Unsafe.o ) [4 of 8] Compiling Data.HashMap.Array ( Data/HashMap/Array.hs, dist/build/Data/HashMap/Array.o ) [5 of 8] Compiling Data.HashMap.Base ( Data/HashMap/Base.hs, dist/build/Data/HashMap/Base.o ) [6 of 8] Compiling Data.HashMap.Strict ( Data/HashMap/Strict.hs, dist/build/Data/HashMap/Strict.o ) [7 of 8] Compiling Data.HashMap.Lazy ( Data/HashMap/Lazy.hs, dist/build/Data/HashMap/Lazy.o ) [8 of 8] Compiling Data.HashSet ( Data/HashSet.hs, dist/build/Data/HashSet.o ) In-place registering unordered-containers-0.2.3.3... Running Haddock for unordered-containers-0.2.3.3... Running hscolour for unordered-containers-0.2.3.3... Preprocessing library unordered-containers-0.2.3.3... Preprocessing library unordered-containers-0.2.3.3... Warning: The documentation for the following packages are not installed. No links will be generated to these packages: rts-1.0, text-0.11.2.3 Haddock coverage: 0% ( 0 / 3) in 'Data.HashMap.UnsafeShift' 50% ( 1 / 2) in 'Data.HashMap.PopCount' 100% ( 2 / 2) in 'Data.HashMap.Unsafe' 38% ( 14 / 37) in 'Data.HashMap.Array' 85% ( 52 / 61) in 'Data.HashMap.Base' 98% ( 44 / 45) in 'Data.HashMap.Strict' 98% ( 44 / 45) in 'Data.HashMap.Lazy' 100% ( 27 / 27) in 'Data.HashSet' Documentation created: dist/doc/html/unordered-containers/index.html Installing library in /srv/hackage/var/build/tmp-install/lib/unordered-containers-0.2.3.3/ghc-7.6.3 Registering unordered-containers-0.2.3.3... Installed unordered-containers-0.2.3.3 Configuring stringable-0.1.2... Building stringable-0.1.2... Preprocessing library stringable-0.1.2... [1 of 1] Compiling Data.Stringable ( Data/Stringable.hs, dist/build/Data/Stringable.o ) In-place registering stringable-0.1.2... Running Haddock for stringable-0.1.2... Running hscolour for stringable-0.1.2... Preprocessing library stringable-0.1.2... Preprocessing library stringable-0.1.2... Warning: The documentation for the following packages are not installed. No links will be generated to these packages: rts-1.0, text-0.11.2.3 Haddock coverage: 0% ( 0 / 3) in 'Data.Stringable' Warning: Data.Stringable: could not find link destinations for: Data.Text.Internal.Text Data.Text.Lazy.Internal.Text Documentation created: dist/doc/html/stringable/index.html Installing library in /srv/hackage/var/build/tmp-install/lib/stringable-0.1.2/ghc-7.6.3 Registering stringable-0.1.2... Installed stringable-0.1.2 Configuring biocore-0.3.1... Building biocore-0.3.1... Preprocessing library biocore-0.3.1... [1 of 3] Compiling Bio.Core.Strand ( src/Bio/Core/Strand.hs, dist/build/Bio/Core/Strand.o ) [2 of 3] Compiling Bio.Core.Sequence ( src/Bio/Core/Sequence.hs, dist/build/Bio/Core/Sequence.o ) [3 of 3] Compiling Bio.Core ( src/Bio/Core.hs, dist/build/Bio/Core.o ) In-place registering biocore-0.3.1... Running Haddock for biocore-0.3.1... Running hscolour for biocore-0.3.1... Preprocessing library biocore-0.3.1... Preprocessing library biocore-0.3.1... Warning: The documentation for the following packages are not installed. No links will be generated to these packages: rts-1.0, text-0.11.2.3 Haddock coverage: 100% ( 2 / 2) in 'Bio.Core.Strand' 100% ( 15 / 15) in 'Bio.Core.Sequence' 100% ( 3 / 3) in 'Bio.Core' Documentation created: dist/doc/html/biocore/index.html Installing library in /srv/hackage/var/build/tmp-install/lib/biocore-0.3.1/ghc-7.6.3 Registering biocore-0.3.1... Installed biocore-0.3.1 Downloading biofasta-0.0.3... Configuring biofasta-0.0.3... Building biofasta-0.0.3... Preprocessing library biofasta-0.0.3... [1 of 1] Compiling Bio.Sequence.Fasta ( src/Bio/Sequence/Fasta.hs, dist/build/Bio/Sequence/Fasta.o ) In-place registering biofasta-0.0.3... Running Haddock for biofasta-0.0.3... Running hscolour for biofasta-0.0.3... Preprocessing library biofasta-0.0.3... Preprocessing library biofasta-0.0.3... Warning: The documentation for the following packages are not installed. No links will be generated to these packages: rts-1.0, text-0.11.2.3 Haddock coverage: 59% ( 10 / 17) in 'Bio.Sequence.Fasta' Documentation created: dist/doc/html/biofasta/index.html Installing library in /srv/hackage/var/build/tmp-install/lib/biofasta-0.0.3/ghc-7.6.3 Registering biofasta-0.0.3... Installed biofasta-0.0.3 Downloading biopsl-0.4... Configuring biopsl-0.4... Building biopsl-0.4... Preprocessing executable 'psluniq' for biopsl-0.4... [1 of 2] Compiling Bio.Alignment.PSL ( src/Bio/Alignment/PSL.hs, dist/build/psluniq/psluniq-tmp/Bio/Alignment/PSL.o ) [2 of 2] Compiling Main ( examples/PslUniq.hs, dist/build/psluniq/psluniq-tmp/Main.o ) Linking dist/build/psluniq/psluniq ... Preprocessing executable 'pslstats' for biopsl-0.4... [1 of 2] Compiling Bio.Alignment.PSL ( src/Bio/Alignment/PSL.hs, dist/build/pslstats/pslstats-tmp/Bio/Alignment/PSL.o ) [2 of 2] Compiling Main ( examples/PslStats.hs, dist/build/pslstats/pslstats-tmp/Main.o ) Linking dist/build/pslstats/pslstats ... Preprocessing executable 'pslfilter' for biopsl-0.4... [1 of 2] Compiling Bio.Alignment.PSL ( src/Bio/Alignment/PSL.hs, dist/build/pslfilter/pslfilter-tmp/Bio/Alignment/PSL.o ) [2 of 2] Compiling Main ( examples/PslFilter.hs, dist/build/pslfilter/pslfilter-tmp/Main.o ) Linking dist/build/pslfilter/pslfilter ... Preprocessing executable 'pslcov' for biopsl-0.4... [1 of 2] Compiling Bio.Alignment.PSL ( src/Bio/Alignment/PSL.hs, dist/build/pslcov/pslcov-tmp/Bio/Alignment/PSL.o ) [2 of 2] Compiling Main ( examples/PslCov.hs, dist/build/pslcov/pslcov-tmp/Main.o ) Linking dist/build/pslcov/pslcov ... Preprocessing library biopsl-0.4... [1 of 1] Compiling Bio.Alignment.PSL ( src/Bio/Alignment/PSL.hs, dist/build/Bio/Alignment/PSL.o ) In-place registering biopsl-0.4... Running Haddock for biopsl-0.4... Running hscolour for biopsl-0.4... Preprocessing executable 'psluniq' for biopsl-0.4... Preprocessing executable 'pslstats' for biopsl-0.4... Preprocessing executable 'pslfilter' for biopsl-0.4... Preprocessing executable 'pslcov' for biopsl-0.4... Preprocessing library biopsl-0.4... Preprocessing executable 'psluniq' for biopsl-0.4... Preprocessing executable 'pslstats' for biopsl-0.4... Preprocessing executable 'pslfilter' for biopsl-0.4... Preprocessing executable 'pslcov' for biopsl-0.4... Preprocessing library biopsl-0.4... Warning: The documentation for the following packages are not installed. No links will be generated to these packages: rts-1.0, text-0.11.2.3, transformers-0.3.0.0 Haddock coverage: 88% ( 7 / 8) in 'Bio.Alignment.PSL' Documentation created: dist/doc/html/biopsl/index.html Installing library in /srv/hackage/var/build/tmp-install/lib/biopsl-0.4/ghc-7.6.3 Installing executable(s) in /srv/hackage/var/build/tmp-install/bin Registering biopsl-0.4... Installed biopsl-0.4 Downloading a50-0.5... Configuring a50-0.5... Building a50-0.5... Preprocessing executable 'a50' for a50-0.5... [1 of 5] Compiling Options ( src/Options.hs, dist/build/a50/a50-tmp/Options.o ) [2 of 5] Compiling Sort ( src/Sort.hs, dist/build/a50/a50-tmp/Sort.o ) [3 of 5] Compiling Blat ( src/Blat.hs, dist/build/a50/a50-tmp/Blat.o ) [4 of 5] Compiling Gnuplot ( src/Gnuplot.hs, dist/build/a50/a50-tmp/Gnuplot.o ) [5 of 5] Compiling Main ( src/A50.hs, dist/build/a50/a50-tmp/Main.o ) Linking dist/build/a50/a50 ... Warning: No documentation was generated as this package does not contain a library. Perhaps you want to use the --executables flag. Installing executable(s) in /srv/hackage/var/build/tmp-install/bin Installed a50-0.5