-----------------------------------------------------------------------------
-- |
-- Module     : Algebra.Graph.AdjacencyMap
-- Copyright  : (c) Andrey Mokhov 2016-2018
-- License    : MIT (see the file LICENSE)
-- Maintainer : andrey.mokhov@gmail.com
-- Stability  : experimental
--
-- __Alga__ is a library for algebraic construction and manipulation of graphs
-- in Haskell. See <https://github.com/snowleopard/alga-paper this paper> for the
-- motivation behind the library, the underlying theory, and implementation details.
--
-- This module defines the 'AdjacencyMap' data type and associated functions.
-- See "Algebra.Graph.AdjacencyMap.Algorithm" for implementations of basic graph
-- algorithms. 'AdjacencyMap' is an instance of the 'C.Graph' type class, which
-- can be used for polymorphic graph construction and manipulation.
-- "Algebra.Graph.AdjacencyIntMap" defines adjacency maps specialised to graphs
-- with @Int@ vertices.
-----------------------------------------------------------------------------
module Algebra.Graph.AdjacencyMap (
    -- * Data structure
    AdjacencyMap, adjacencyMap,

    -- * Basic graph construction primitives
    empty, vertex, edge, overlay, connect, vertices, edges, overlays, connects,

    -- * Relations on graphs
    isSubgraphOf,

    -- * Graph properties
    isEmpty, hasVertex, hasEdge, vertexCount, edgeCount, vertexList, edgeList,
    adjacencyList, vertexSet, edgeSet, preSet, postSet,

    -- * Standard families of graphs
    path, circuit, clique, biclique, star, stars, fromAdjacencySets, tree,
    forest,

    -- * Graph transformation
    removeVertex, removeEdge, replaceVertex, mergeVertices, transpose, gmap,
    induce,

    -- * Relational operations
    compose, closure, reflexiveClosure, symmetricClosure, transitiveClosure
    ) where

import Data.Foldable (foldMap)
import Data.Monoid
import Data.Set (Set)
import Data.Tree

import Algebra.Graph.AdjacencyMap.Internal

import qualified Data.Map.Strict as Map
import qualified Data.Set        as Set

-- | Construct the /empty graph/.
-- Complexity: /O(1)/ time and memory.
--
-- @
-- 'isEmpty'     empty == True
-- 'hasVertex' x empty == False
-- 'vertexCount' empty == 0
-- 'edgeCount'   empty == 0
-- @
empty :: AdjacencyMap a
empty = AM Map.empty
{-# NOINLINE [1] empty #-}

-- | Construct the graph comprising /a single isolated vertex/.
-- Complexity: /O(1)/ time and memory.
--
-- @
-- 'isEmpty'     (vertex x) == False
-- 'hasVertex' x (vertex x) == True
-- 'vertexCount' (vertex x) == 1
-- 'edgeCount'   (vertex x) == 0
-- @
vertex :: a -> AdjacencyMap a
vertex x = AM $ Map.singleton x Set.empty
{-# NOINLINE [1] vertex #-}

-- | Construct the graph comprising /a single edge/.
-- Complexity: /O(1)/ time, memory.
--
-- @
-- edge x y               == 'connect' ('vertex' x) ('vertex' y)
-- 'hasEdge' x y (edge x y) == True
-- 'edgeCount'   (edge x y) == 1
-- 'vertexCount' (edge 1 1) == 1
-- 'vertexCount' (edge 1 2) == 2
-- @
edge :: Ord a => a -> a -> AdjacencyMap a
edge x y | x == y    = AM $ Map.singleton x (Set.singleton y)
         | otherwise = AM $ Map.fromList [(x, Set.singleton y), (y, Set.empty)]

-- | /Overlay/ two graphs. This is a commutative, associative and idempotent
-- operation with the identity 'empty'.
-- Complexity: /O((n + m) * log(n))/ time and /O(n + m)/ memory.
--
-- @
-- 'isEmpty'     (overlay x y) == 'isEmpty'   x   && 'isEmpty'   y
-- 'hasVertex' z (overlay x y) == 'hasVertex' z x || 'hasVertex' z y
-- 'vertexCount' (overlay x y) >= 'vertexCount' x
-- 'vertexCount' (overlay x y) <= 'vertexCount' x + 'vertexCount' y
-- 'edgeCount'   (overlay x y) >= 'edgeCount' x
-- 'edgeCount'   (overlay x y) <= 'edgeCount' x   + 'edgeCount' y
-- 'vertexCount' (overlay 1 2) == 2
-- 'edgeCount'   (overlay 1 2) == 0
-- @
overlay :: Ord a => AdjacencyMap a -> AdjacencyMap a -> AdjacencyMap a
overlay x y = AM $ Map.unionWith Set.union (adjacencyMap x) (adjacencyMap y)
{-# NOINLINE [1] overlay #-}

-- | /Connect/ two graphs. This is an associative operation with the identity
-- 'empty', which distributes over 'overlay' and obeys the decomposition axiom.
-- Complexity: /O((n + m) * log(n))/ time and /O(n + m)/ memory. Note that the
-- number of edges in the resulting graph is quadratic with respect to the number
-- of vertices of the arguments: /m = O(m1 + m2 + n1 * n2)/.
--
-- @
-- 'isEmpty'     (connect x y) == 'isEmpty'   x   && 'isEmpty'   y
-- 'hasVertex' z (connect x y) == 'hasVertex' z x || 'hasVertex' z y
-- 'vertexCount' (connect x y) >= 'vertexCount' x
-- 'vertexCount' (connect x y) <= 'vertexCount' x + 'vertexCount' y
-- 'edgeCount'   (connect x y) >= 'edgeCount' x
-- 'edgeCount'   (connect x y) >= 'edgeCount' y
-- 'edgeCount'   (connect x y) >= 'vertexCount' x * 'vertexCount' y
-- 'edgeCount'   (connect x y) <= 'vertexCount' x * 'vertexCount' y + 'edgeCount' x + 'edgeCount' y
-- 'vertexCount' (connect 1 2) == 2
-- 'edgeCount'   (connect 1 2) == 1
-- @
connect :: Ord a => AdjacencyMap a -> AdjacencyMap a -> AdjacencyMap a
connect x y = AM $ Map.unionsWith Set.union $ adjacencyMap x : adjacencyMap y :
    [ Map.fromSet (const . Map.keysSet $ adjacencyMap y) (Map.keysSet $ adjacencyMap x) ]
{-# NOINLINE [1] connect #-}

-- | Construct the graph comprising a given list of isolated vertices.
-- Complexity: /O(L * log(L))/ time and /O(L)/ memory, where /L/ is the length
-- of the given list.
--
-- @
-- vertices []            == 'empty'
-- vertices [x]           == 'vertex' x
-- 'hasVertex' x . vertices == 'elem' x
-- 'vertexCount' . vertices == 'length' . 'Data.List.nub'
-- 'vertexSet'   . vertices == Set.'Set.fromList'
-- @
vertices :: Ord a => [a] -> AdjacencyMap a
vertices = AM . Map.fromList . map (\x -> (x, Set.empty))
{-# NOINLINE [1] vertices #-}

-- | Construct the graph from a list of edges.
-- Complexity: /O((n + m) * log(n))/ time and /O(n + m)/ memory.
--
-- @
-- edges []          == 'empty'
-- edges [(x,y)]     == 'edge' x y
-- 'edgeCount' . edges == 'length' . 'Data.List.nub'
-- 'edgeList' . edges  == 'Data.List.nub' . 'Data.List.sort'
-- @
edges :: Ord a => [(a, a)] -> AdjacencyMap a
edges = fromAdjacencySets . map (fmap Set.singleton)

-- | Overlay a given list of graphs.
-- Complexity: /O((n + m) * log(n))/ time and /O(n + m)/ memory.
--
-- @
-- overlays []        == 'empty'
-- overlays [x]       == x
-- overlays [x,y]     == 'overlay' x y
-- overlays           == 'foldr' 'overlay' 'empty'
-- 'isEmpty' . overlays == 'all' 'isEmpty'
-- @
overlays :: Ord a => [AdjacencyMap a] -> AdjacencyMap a
overlays = AM . Map.unionsWith Set.union . map adjacencyMap
{-# NOINLINE overlays #-}

-- | Connect a given list of graphs.
-- Complexity: /O((n + m) * log(n))/ time and /O(n + m)/ memory.
--
-- @
-- connects []        == 'empty'
-- connects [x]       == x
-- connects [x,y]     == 'connect' x y
-- connects           == 'foldr' 'connect' 'empty'
-- 'isEmpty' . connects == 'all' 'isEmpty'
-- @
connects :: Ord a => [AdjacencyMap a] -> AdjacencyMap a
connects = foldr connect empty
{-# NOINLINE connects #-}

-- | The 'isSubgraphOf' function takes two graphs and returns 'True' if the
-- first graph is a /subgraph/ of the second.
-- Complexity: /O((n + m) * log(n))/ time.
--
-- @
-- isSubgraphOf 'empty'         x             ==  True
-- isSubgraphOf ('vertex' x)    'empty'         ==  False
-- isSubgraphOf x             ('overlay' x y) ==  True
-- isSubgraphOf ('overlay' x y) ('connect' x y) ==  True
-- isSubgraphOf ('path' xs)     ('circuit' xs)  ==  True
-- isSubgraphOf x y                         ==> x <= y
-- @
isSubgraphOf :: Ord a => AdjacencyMap a -> AdjacencyMap a -> Bool
isSubgraphOf x y = Map.isSubmapOfBy Set.isSubsetOf (adjacencyMap x) (adjacencyMap y)

-- | Check if a graph is empty.
-- Complexity: /O(1)/ time.
--
-- @
-- isEmpty 'empty'                       == True
-- isEmpty ('overlay' 'empty' 'empty')       == True
-- isEmpty ('vertex' x)                  == False
-- isEmpty ('removeVertex' x $ 'vertex' x) == True
-- isEmpty ('removeEdge' x y $ 'edge' x y) == False
-- @
isEmpty :: AdjacencyMap a -> Bool
isEmpty = Map.null . adjacencyMap

-- | Check if a graph contains a given vertex.
-- Complexity: /O(log(n))/ time.
--
-- @
-- hasVertex x 'empty'            == False
-- hasVertex x ('vertex' x)       == True
-- hasVertex 1 ('vertex' 2)       == False
-- hasVertex x . 'removeVertex' x == 'const' False
-- @
hasVertex :: Ord a => a -> AdjacencyMap a -> Bool
hasVertex x = Map.member x . adjacencyMap

-- | Check if a graph contains a given edge.
-- Complexity: /O(log(n))/ time.
--
-- @
-- hasEdge x y 'empty'            == False
-- hasEdge x y ('vertex' z)       == False
-- hasEdge x y ('edge' x y)       == True
-- hasEdge x y . 'removeEdge' x y == 'const' False
-- hasEdge x y                  == 'elem' (x,y) . 'edgeList'
-- @
hasEdge :: Ord a => a -> a -> AdjacencyMap a -> Bool
hasEdge u v a = case Map.lookup u (adjacencyMap a) of
    Nothing -> False
    Just vs -> Set.member v vs

-- | The number of vertices in a graph.
-- Complexity: /O(1)/ time.
--
-- @
-- vertexCount 'empty'             ==  0
-- vertexCount ('vertex' x)        ==  1
-- vertexCount                   ==  'length' . 'vertexList'
-- vertexCount x \< vertexCount y ==> x \< y
-- @
vertexCount :: AdjacencyMap a -> Int
vertexCount = Map.size . adjacencyMap

-- | The number of edges in a graph.
-- Complexity: /O(n)/ time.
--
-- @
-- edgeCount 'empty'      == 0
-- edgeCount ('vertex' x) == 0
-- edgeCount ('edge' x y) == 1
-- edgeCount            == 'length' . 'edgeList'
-- @
edgeCount :: AdjacencyMap a -> Int
edgeCount = getSum . foldMap (Sum . Set.size) . adjacencyMap

-- | The sorted list of vertices of a given graph.
-- Complexity: /O(n)/ time and memory.
--
-- @
-- vertexList 'empty'      == []
-- vertexList ('vertex' x) == [x]
-- vertexList . 'vertices' == 'Data.List.nub' . 'Data.List.sort'
-- @
vertexList :: AdjacencyMap a -> [a]
vertexList = Map.keys . adjacencyMap

-- | The sorted list of edges of a graph.
-- Complexity: /O(n + m)/ time and /O(m)/ memory.
--
-- @
-- edgeList 'empty'          == []
-- edgeList ('vertex' x)     == []
-- edgeList ('edge' x y)     == [(x,y)]
-- edgeList ('star' 2 [3,1]) == [(2,1), (2,3)]
-- edgeList . 'edges'        == 'Data.List.nub' . 'Data.List.sort'
-- edgeList . 'transpose'    == 'Data.List.sort' . 'map' 'Data.Tuple.swap' . edgeList
-- @
edgeList :: AdjacencyMap a -> [(a, a)]
edgeList (AM m) = [ (x, y) | (x, ys) <- Map.toAscList m, y <- Set.toAscList ys ]

-- | The set of vertices of a given graph.
-- Complexity: /O(n)/ time and memory.
--
-- @
-- vertexSet 'empty'      == Set.'Set.empty'
-- vertexSet . 'vertex'   == Set.'Set.singleton'
-- vertexSet . 'vertices' == Set.'Set.fromList'
-- @
vertexSet :: AdjacencyMap a -> Set a
vertexSet = Map.keysSet . adjacencyMap

-- | The set of edges of a given graph.
-- Complexity: /O((n + m) * log(m))/ time and /O(m)/ memory.
--
-- @
-- edgeSet 'empty'      == Set.'Set.empty'
-- edgeSet ('vertex' x) == Set.'Set.empty'
-- edgeSet ('edge' x y) == Set.'Set.singleton' (x,y)
-- edgeSet . 'edges'    == Set.'Set.fromList'
-- @
edgeSet :: Eq a => AdjacencyMap a -> Set (a, a)
edgeSet = Set.fromAscList . edgeList

-- | The sorted /adjacency list/ of a graph.
-- Complexity: /O(n + m)/ time and /O(m)/ memory.
--
-- @
-- adjacencyList 'empty'          == []
-- adjacencyList ('vertex' x)     == [(x, [])]
-- adjacencyList ('edge' 1 2)     == [(1, [2]), (2, [])]
-- adjacencyList ('star' 2 [3,1]) == [(1, []), (2, [1,3]), (3, [])]
-- 'stars' . adjacencyList        == id
-- @
adjacencyList :: AdjacencyMap a -> [(a, [a])]
adjacencyList = map (fmap Set.toAscList) . Map.toAscList . adjacencyMap

-- | The /preset/ of an element @x@ is the set of its /direct predecessors/.
-- Complexity: /O(n * log(n))/ time and /O(n)/ memory.
--
-- @
-- preSet x 'empty'      == Set.'Set.empty'
-- preSet x ('vertex' x) == Set.'Set.empty'
-- preSet 1 ('edge' 1 2) == Set.'Set.empty'
-- preSet y ('edge' x y) == Set.'Set.fromList' [x]
-- @
preSet :: Ord a => a -> AdjacencyMap a -> Set.Set a
preSet x = Set.fromAscList . map fst . filter p  . Map.toAscList . adjacencyMap
  where
    p (_, set) = x `Set.member` set

-- | The /postset/ of a vertex is the set of its /direct successors/.
-- Complexity: /O(log(n))/ time and /O(1)/ memory.
--
-- @
-- postSet x 'empty'      == Set.'Set.empty'
-- postSet x ('vertex' x) == Set.'Set.empty'
-- postSet x ('edge' x y) == Set.'Set.fromList' [y]
-- postSet 2 ('edge' 1 2) == Set.'Set.empty'
-- @
postSet :: Ord a => a -> AdjacencyMap a -> Set a
postSet x = Map.findWithDefault Set.empty x . adjacencyMap

-- | The /path/ on a list of vertices.
-- Complexity: /O((n + m) * log(n))/ time and /O(n + m)/ memory.
--
-- @
-- path []        == 'empty'
-- path [x]       == 'vertex' x
-- path [x,y]     == 'edge' x y
-- path . 'reverse' == 'transpose' . path
-- @
path :: Ord a => [a] -> AdjacencyMap a
path xs = case xs of []     -> empty
                     [x]    -> vertex x
                     (_:ys) -> edges (zip xs ys)

-- | The /circuit/ on a list of vertices.
-- Complexity: /O((n + m) * log(n))/ time and /O(n + m)/ memory.
--
-- @
-- circuit []        == 'empty'
-- circuit [x]       == 'edge' x x
-- circuit [x,y]     == 'edges' [(x,y), (y,x)]
-- circuit . 'reverse' == 'transpose' . circuit
-- @
circuit :: Ord a => [a] -> AdjacencyMap a
circuit []     = empty
circuit (x:xs) = path $ [x] ++ xs ++ [x]

-- | The /clique/ on a list of vertices.
-- Complexity: /O((n + m) * log(n))/ time and /O(n + m)/ memory.
--
-- @
-- clique []         == 'empty'
-- clique [x]        == 'vertex' x
-- clique [x,y]      == 'edge' x y
-- clique [x,y,z]    == 'edges' [(x,y), (x,z), (y,z)]
-- clique (xs '++' ys) == 'connect' (clique xs) (clique ys)
-- clique . 'reverse'  == 'transpose' . clique
-- @
clique :: Ord a => [a] -> AdjacencyMap a
clique = fromAdjacencySets . fst . go
  where
    go []     = ([], Set.empty)
    go (x:xs) = let (res, set) = go xs in ((x, set) : res, Set.insert x set)
{-# NOINLINE [1] clique #-}

-- | The /biclique/ on two lists of vertices.
-- Complexity: /O(n * log(n) + m)/ time and /O(n + m)/ memory.
--
-- @
-- biclique []      []      == 'empty'
-- biclique [x]     []      == 'vertex' x
-- biclique []      [y]     == 'vertex' y
-- biclique [x1,x2] [y1,y2] == 'edges' [(x1,y1), (x1,y2), (x2,y1), (x2,y2)]
-- biclique xs      ys      == 'connect' ('vertices' xs) ('vertices' ys)
-- @
biclique :: Ord a => [a] -> [a] -> AdjacencyMap a
biclique xs ys = AM $ Map.fromSet adjacent (x `Set.union` y)
  where
    x = Set.fromList xs
    y = Set.fromList ys
    adjacent v = if v `Set.member` x then y else Set.empty

-- TODO: Optimise.
-- | The /star/ formed by a centre vertex connected to a list of leaves.
-- Complexity: /O((n + m) * log(n))/ time and /O(n + m)/ memory.
--
-- @
-- star x []    == 'vertex' x
-- star x [y]   == 'edge' x y
-- star x [y,z] == 'edges' [(x,y), (x,z)]
-- star x ys    == 'connect' ('vertex' x) ('vertices' ys)
-- @
star :: Ord a => a -> [a] -> AdjacencyMap a
star x [] = vertex x
star x ys = connect (vertex x) (vertices ys)
{-# INLINE star #-}

-- | The /stars/ formed by overlaying a list of 'star's. An inverse of
-- 'adjacencyList'.
-- Complexity: /O(L * log(n))/ time, memory and size, where /L/ is the total
-- size of the input.
--
-- @
-- stars []                      == 'empty'
-- stars [(x, [])]               == 'vertex' x
-- stars [(x, [y])]              == 'edge' x y
-- stars [(x, ys)]               == 'star' x ys
-- stars                         == 'overlays' . 'map' ('uncurry' 'star')
-- stars . 'adjacencyList'         == id
-- 'overlay' (stars xs) (stars ys) == stars (xs '++' ys)
-- @
stars :: Ord a => [(a, [a])] -> AdjacencyMap a
stars = fromAdjacencySets . map (fmap Set.fromList)

-- | Construct a graph from a list of adjacency sets; a variation of 'stars'.
-- Complexity: /O((n + m) * log(n))/ time and /O(n + m)/ memory.
--
-- @
-- fromAdjacencySets []                                  == 'empty'
-- fromAdjacencySets [(x, Set.'Set.empty')]                    == 'vertex' x
-- fromAdjacencySets [(x, Set.'Set.singleton' y)]              == 'edge' x y
-- fromAdjacencySets . 'map' ('fmap' Set.'Set.fromList')           == 'stars'
-- 'overlay' (fromAdjacencySets xs) (fromAdjacencySets ys) == fromAdjacencySets (xs '++' ys)
-- @
fromAdjacencySets :: Ord a => [(a, Set a)] -> AdjacencyMap a
fromAdjacencySets ss = AM $ Map.unionWith Set.union vs es
  where
    vs = Map.fromSet (const Set.empty) . Set.unions $ map snd ss
    es = Map.fromListWith Set.union ss

-- | The /tree graph/ constructed from a given 'Tree' data structure.
-- Complexity: /O((n + m) * log(n))/ time and /O(n + m)/ memory.
--
-- @
-- tree (Node x [])                                         == 'vertex' x
-- tree (Node x [Node y [Node z []]])                       == 'path' [x,y,z]
-- tree (Node x [Node y [], Node z []])                     == 'star' x [y,z]
-- tree (Node 1 [Node 2 [], Node 3 [Node 4 [], Node 5 []]]) == 'edges' [(1,2), (1,3), (3,4), (3,5)]
-- @
tree :: Ord a => Tree a -> AdjacencyMap a
tree (Node x []) = vertex x
tree (Node x f ) = star x (map rootLabel f)
    `overlay` forest (filter (not . null . subForest) f)

-- | The /forest graph/ constructed from a given 'Forest' data structure.
-- Complexity: /O((n + m) * log(n))/ time and /O(n + m)/ memory.
--
-- @
-- forest []                                                  == 'empty'
-- forest [x]                                                 == 'tree' x
-- forest [Node 1 [Node 2 [], Node 3 []], Node 4 [Node 5 []]] == 'edges' [(1,2), (1,3), (4,5)]
-- forest                                                     == 'overlays' . 'map' 'tree'
-- @
forest :: Ord a => Forest a -> AdjacencyMap a
forest = overlays . map tree

-- | Remove a vertex from a given graph.
-- Complexity: /O(n*log(n))/ time.
--
-- @
-- removeVertex x ('vertex' x)       == 'empty'
-- removeVertex 1 ('vertex' 2)       == 'vertex' 2
-- removeVertex x ('edge' x x)       == 'empty'
-- removeVertex 1 ('edge' 1 2)       == 'vertex' 2
-- removeVertex x . removeVertex x == removeVertex x
-- @
removeVertex :: Ord a => a -> AdjacencyMap a -> AdjacencyMap a
removeVertex x = AM . Map.map (Set.delete x) . Map.delete x . adjacencyMap

-- | Remove an edge from a given graph.
-- Complexity: /O(log(n))/ time.
--
-- @
-- removeEdge x y ('edge' x y)       == 'vertices' [x,y]
-- removeEdge x y . removeEdge x y == removeEdge x y
-- removeEdge x y . 'removeVertex' x == 'removeVertex' x
-- removeEdge 1 1 (1 * 1 * 2 * 2)  == 1 * 2 * 2
-- removeEdge 1 2 (1 * 1 * 2 * 2)  == 1 * 1 + 2 * 2
-- @
removeEdge :: Ord a => a -> a -> AdjacencyMap a -> AdjacencyMap a
removeEdge x y = AM . Map.adjust (Set.delete y) x . adjacencyMap

-- | The function @'replaceVertex' x y@ replaces vertex @x@ with vertex @y@ in a
-- given 'AdjacencyMap'. If @y@ already exists, @x@ and @y@ will be merged.
-- Complexity: /O((n + m) * log(n))/ time.
--
-- @
-- replaceVertex x x            == id
-- replaceVertex x y ('vertex' x) == 'vertex' y
-- replaceVertex x y            == 'mergeVertices' (== x) y
-- @
replaceVertex :: Ord a => a -> a -> AdjacencyMap a -> AdjacencyMap a
replaceVertex u v = gmap $ \w -> if w == u then v else w

-- | Merge vertices satisfying a given predicate into a given vertex.
-- Complexity: /O((n + m) * log(n))/ time, assuming that the predicate takes
-- /O(1)/ to be evaluated.
--
-- @
-- mergeVertices ('const' False) x    == id
-- mergeVertices (== x) y           == 'replaceVertex' x y
-- mergeVertices 'even' 1 (0 * 2)     == 1 * 1
-- mergeVertices 'odd'  1 (3 + 4 * 5) == 4 * 1
-- @
mergeVertices :: Ord a => (a -> Bool) -> a -> AdjacencyMap a -> AdjacencyMap a
mergeVertices p v = gmap $ \u -> if p u then v else u

-- | Transpose a given graph.
-- Complexity: /O(m * log(n))/ time, /O(n + m)/ memory.
--
-- @
-- transpose 'empty'       == 'empty'
-- transpose ('vertex' x)  == 'vertex' x
-- transpose ('edge' x y)  == 'edge' y x
-- transpose . transpose == id
-- 'edgeList' . transpose  == 'Data.List.sort' . 'map' 'Data.Tuple.swap' . 'edgeList'
-- @
transpose :: Ord a => AdjacencyMap a -> AdjacencyMap a
transpose (AM m) = AM $ Map.foldrWithKey combine vs m
  where
    combine v es = Map.unionWith Set.union (Map.fromSet (const $ Set.singleton v) es)
    vs           = Map.fromSet (const Set.empty) (Map.keysSet m)
{-# NOINLINE [1] transpose #-}

{-# RULES
"transpose/empty"    transpose empty = empty
"transpose/vertex"   forall x. transpose (vertex x) = vertex x
"transpose/overlay"  forall g1 g2. transpose (overlay g1 g2) = overlay (transpose g1) (transpose g2)
"transpose/connect"  forall g1 g2. transpose (connect g1 g2) = connect (transpose g2) (transpose g1)

"transpose/overlays" forall xs. transpose (overlays xs) = overlays (map transpose xs)
"transpose/connects" forall xs. transpose (connects xs) = connects (reverse (map transpose xs))

"transpose/vertices" forall xs. transpose (vertices xs) = vertices xs
"transpose/clique"   forall xs. transpose (clique xs)   = clique (reverse xs)
 #-}

-- | Transform a graph by applying a function to each of its vertices. This is
-- similar to @Functor@'s 'fmap' but can be used with non-fully-parametric
-- 'AdjacencyMap'.
-- Complexity: /O((n + m) * log(n))/ time.
--
-- @
-- gmap f 'empty'      == 'empty'
-- gmap f ('vertex' x) == 'vertex' (f x)
-- gmap f ('edge' x y) == 'edge' (f x) (f y)
-- gmap 'id'           == 'id'
-- gmap f . gmap g   == gmap (f . g)
-- @
gmap :: (Ord a, Ord b) => (a -> b) -> AdjacencyMap a -> AdjacencyMap b
gmap f = AM . Map.map (Set.map f) . Map.mapKeysWith Set.union f . adjacencyMap

-- | Construct the /induced subgraph/ of a given graph by removing the
-- vertices that do not satisfy a given predicate.
-- Complexity: /O(m)/ time, assuming that the predicate takes /O(1)/ to
-- be evaluated.
--
-- @
-- induce ('const' True ) x      == x
-- induce ('const' False) x      == 'empty'
-- induce (/= x)               == 'removeVertex' x
-- induce p . induce q         == induce (\\x -> p x && q x)
-- 'isSubgraphOf' (induce p x) x == True
-- @
induce :: (a -> Bool) -> AdjacencyMap a -> AdjacencyMap a
induce p = AM . Map.map (Set.filter p) . Map.filterWithKey (\k _ -> p k) . adjacencyMap

-- | Left-to-right /relational composition/ of graphs: vertices @x@ and @z@ are
-- connected in the resulting graph if there is a vertex @y@, such that @x@ is
-- connected to @y@ in the first graph, and @y@ is connected to @z@ in the
-- second graph. There are no isolated vertices in the result. This operation is
-- associative, has 'empty' and single-'vertex' graphs as /annihilating zeroes/,
-- and distributes over 'overlay'.
-- Complexity: /O(n * m * log(n))/ time and /O(n + m)/ memory.
--
-- @
-- compose 'empty'            x                == 'empty'
-- compose x                'empty'            == 'empty'
-- compose ('vertex' x)       y                == 'empty'
-- compose x                ('vertex' y)       == 'empty'
-- compose x                (compose y z)    == compose (compose x y) z
-- compose x                ('overlay' y z)    == 'overlay' (compose x y) (compose x z)
-- compose ('overlay' x y)    z                == 'overlay' (compose x z) (compose y z)
-- compose ('edge' x y)       ('edge' y z)       == 'edge' x z
-- compose ('path'    [1..5]) ('path'    [1..5]) == 'edges' [(1,3), (2,4), (3,5)]
-- compose ('circuit' [1..5]) ('circuit' [1..5]) == 'circuit' [1,3,5,2,4]
-- @
compose :: Ord a => AdjacencyMap a -> AdjacencyMap a -> AdjacencyMap a
compose x y = fromAdjacencySets
    [ (t, ys) | v <- Set.toList vs, let ys = postSet v y, not (Set.null ys)
              , t <- Set.toList (postSet v tx) ]
  where
    tx = transpose x
    vs = vertexSet x `Set.union` vertexSet y

-- | Compute the /reflexive and transitive closure/ of a graph.
-- Complexity: /O(n * m * log(n)^2)/ time.
--
-- @
-- closure 'empty'           == 'empty'
-- closure ('vertex' x)      == 'edge' x x
-- closure ('edge' x x)      == 'edge' x x
-- closure ('edge' x y)      == 'edges' [(x,x), (x,y), (y,y)]
-- closure ('path' $ 'Data.List.nub' xs) == 'reflexiveClosure' ('clique' $ 'Data.List.nub' xs)
-- closure                 == 'reflexiveClosure' . 'transitiveClosure'
-- closure                 == 'transitiveClosure' . 'reflexiveClosure'
-- closure . closure       == closure
-- 'postSet' x (closure y)   == Set.'Set.fromList' ('Algebra.Graph.ToGraph.reachable' x y)
-- @
closure :: Ord a => AdjacencyMap a -> AdjacencyMap a
closure = reflexiveClosure . transitiveClosure

-- | Compute the /reflexive closure/ of a graph by adding a self-loop to every
-- vertex.
-- Complexity: /O(n * log(n))/ time.
--
-- @
-- reflexiveClosure 'empty'              == 'empty'
-- reflexiveClosure ('vertex' x)         == 'edge' x x
-- reflexiveClosure ('edge' x x)         == 'edge' x x
-- reflexiveClosure ('edge' x y)         == 'edges' [(x,x), (x,y), (y,y)]
-- reflexiveClosure . reflexiveClosure == reflexiveClosure
-- @
reflexiveClosure :: Ord a => AdjacencyMap a -> AdjacencyMap a
reflexiveClosure (AM m) = AM $ Map.mapWithKey (\k -> Set.insert k) m

-- | Compute the /symmetric closure/ of a graph by overlaying it with its own
-- transpose.
-- Complexity: /O((n + m) * log(n))/ time.
--
-- @
-- symmetricClosure 'empty'              == 'empty'
-- symmetricClosure ('vertex' x)         == 'vertex' x
-- symmetricClosure ('edge' x y)         == 'edges' [(x,y), (y,x)]
-- symmetricClosure x                  == 'overlay' x ('transpose' x)
-- symmetricClosure . symmetricClosure == symmetricClosure
-- @
symmetricClosure :: Ord a => AdjacencyMap a -> AdjacencyMap a
symmetricClosure m = overlay m (transpose m)

-- | Compute the /transitive closure/ of a graph.
-- Complexity: /O(n * m * log(n)^2)/ time.
--
-- @
-- transitiveClosure 'empty'               == 'empty'
-- transitiveClosure ('vertex' x)          == 'vertex' x
-- transitiveClosure ('edge' x y)          == 'edge' x y
-- transitiveClosure ('path' $ 'Data.List.nub' xs)     == 'clique' ('Data.List.nub' xs)
-- transitiveClosure . transitiveClosure == transitiveClosure
-- @
transitiveClosure :: Ord a => AdjacencyMap a -> AdjacencyMap a
transitiveClosure old
    | old == new = old
    | otherwise  = transitiveClosure new
  where
    new = overlay old (old `compose` old)