Build #1 for bio-0.3.3.1
| Package | bio-0.3.3.1 |
|---|
| Install | BuildFailed |
|---|---|
| Docs | NotTried |
| Tests | NotTried |
| Time submitted | unknown |
|---|---|
| Compiler | ghc-7.6.3 |
| OS | linux |
| Arch | x86_64 |
| Dependencies | tagsoup-0.13, parsec-3.1.3, parallel-3.2.0.4, interlude-0.1.2, containers-0.5.0.0, bytestring-0.10.0.2, binary-0.5.1.1, base-4.6.0.1, array-0.4.0.1, QuickCheck-1.2.0.1 |
| Flags | none |
Code Coverage
No Code Coverage was submitted for this report.
Build log
[view raw]
Resolving dependencies...
Configuring QuickCheck-1.2.0.1...
Building QuickCheck-1.2.0.1...
Preprocessing library QuickCheck-1.2.0.1...
[1 of 8] Compiling Test.QuickCheck ( Test/QuickCheck.hs, dist/build/Test/QuickCheck.o )
[2 of 8] Compiling Test.QuickCheck.Batch ( Test/QuickCheck/Batch.hs, dist/build/Test/QuickCheck/Batch.o )
[3 of 8] Compiling Test.QuickCheck.Utils ( Test/QuickCheck/Utils.hs, dist/build/Test/QuickCheck/Utils.o )
[4 of 8] Compiling Test.QuickCheck.Poly ( Test/QuickCheck/Poly.hs, dist/build/Test/QuickCheck/Poly.o )
[5 of 8] Compiling Debug.QuickCheck.Poly ( Debug/QuickCheck/Poly.hs, dist/build/Debug/QuickCheck/Poly.o )
[6 of 8] Compiling Debug.QuickCheck.Utils ( Debug/QuickCheck/Utils.hs, dist/build/Debug/QuickCheck/Utils.o )
[7 of 8] Compiling Debug.QuickCheck ( Debug/QuickCheck.hs, dist/build/Debug/QuickCheck.o )
[8 of 8] Compiling Debug.QuickCheck.Batch ( Debug/QuickCheck/Batch.hs, dist/build/Debug/QuickCheck/Batch.o )
In-place registering QuickCheck-1.2.0.1...
Running Haddock for QuickCheck-1.2.0.1...
Running hscolour for QuickCheck-1.2.0.1...
Preprocessing library QuickCheck-1.2.0.1...
Preprocessing library QuickCheck-1.2.0.1...
Warning: The documentation for the following packages are not installed. No
links will be generated to these packages: random-1.0.1.1
Haddock coverage:
3% ( 1 / 33) in 'Test.QuickCheck'
50% ( 4 / 8) in 'Test.QuickCheck.Batch'
17% ( 1 / 6) in 'Test.QuickCheck.Utils'
14% ( 1 / 7) in 'Test.QuickCheck.Poly'
100% ( 2 / 2) in 'Debug.QuickCheck.Poly'
100% ( 2 / 2) in 'Debug.QuickCheck.Utils'
100% ( 2 / 2) in 'Debug.QuickCheck.Batch'
100% ( 2 / 2) in 'Debug.QuickCheck'
Warning: Test.QuickCheck: could not find link destinations for:
System.Random.Random System.Random.StdGen
Warning: Test.QuickCheck.Poly: could not find link destinations for:
Test.QuickCheck.Poly.Poly Test.QuickCheck.Poly.ALPHA_ Test.QuickCheck.Poly.BETA_ Test.QuickCheck.Poly.GAMMA_ Test.QuickCheck.Poly.OrdALPHA_ Test.QuickCheck.Poly.OrdBETA_ Test.QuickCheck.Poly.OrdGAMMA_
Documentation created: dist/doc/html/QuickCheck/index.html
Installing library in
/srv/hackage/var/build/tmp-install/lib/x86_64-linux-ghc-7.6.3/QuickCheck-1.2.0.1
Registering QuickCheck-1.2.0.1...
Installed QuickCheck-1.2.0.1
Downloading interlude-0.1.2...
Configuring interlude-0.1.2...
Building interlude-0.1.2...
Preprocessing library interlude-0.1.2...
[1 of 1] Compiling Interlude ( Interlude.hs, dist/build/Interlude.o )
In-place registering interlude-0.1.2...
Running Haddock for interlude-0.1.2...
Running hscolour for interlude-0.1.2...
Preprocessing library interlude-0.1.2...
Preprocessing library interlude-0.1.2...
Haddock coverage:
67% ( 2 / 3) in 'Interlude'
Documentation created: dist/doc/html/interlude/index.html
Installing library in
/srv/hackage/var/build/tmp-install/lib/x86_64-linux-ghc-7.6.3/interlude-0.1.2
Registering interlude-0.1.2...
Installed interlude-0.1.2
Configuring parallel-3.2.0.4...
Building parallel-3.2.0.4...
Preprocessing library parallel-3.2.0.4...
[1 of 3] Compiling Control.Parallel ( Control/Parallel.hs, dist/build/Control/Parallel.o )
[2 of 3] Compiling Control.Seq ( Control/Seq.hs, dist/build/Control/Seq.o )
[3 of 3] Compiling Control.Parallel.Strategies ( Control/Parallel/Strategies.hs, dist/build/Control/Parallel/Strategies.o )
In-place registering parallel-3.2.0.4...
Running Haddock for parallel-3.2.0.4...
Running hscolour for parallel-3.2.0.4...
Preprocessing library parallel-3.2.0.4...
Preprocessing library parallel-3.2.0.4...
Haddock coverage:
100% ( 3 / 3) in 'Control.Parallel'
72% ( 21 / 29) in 'Control.Seq'
81% ( 68 / 84) in 'Control.Parallel.Strategies'
Documentation created: dist/doc/html/parallel/index.html
Installing library in
/srv/hackage/var/build/tmp-install/lib/x86_64-linux-ghc-7.6.3/parallel-3.2.0.4
Registering parallel-3.2.0.4...
Installed parallel-3.2.0.4
Configuring tagsoup-0.13...
Building tagsoup-0.13...
Preprocessing library tagsoup-0.13...
[ 1 of 13] Compiling Text.HTML.TagSoup.Entity ( Text/HTML/TagSoup/Entity.hs, dist/build/Text/HTML/TagSoup/Entity.o )
[ 2 of 13] Compiling Text.StringLike ( Text/StringLike.hs, dist/build/Text/StringLike.o )
[ 3 of 13] Compiling Text.HTML.TagSoup.Type ( Text/HTML/TagSoup/Type.hs, dist/build/Text/HTML/TagSoup/Type.o )
[ 4 of 13] Compiling Text.HTML.TagSoup.Match ( Text/HTML/TagSoup/Match.hs, dist/build/Text/HTML/TagSoup/Match.o )
[ 5 of 13] Compiling Text.HTML.TagSoup.Tree ( Text/HTML/TagSoup/Tree.hs, dist/build/Text/HTML/TagSoup/Tree.o )
[ 6 of 13] Compiling Text.HTML.TagSoup.Options ( Text/HTML/TagSoup/Options.hs, dist/build/Text/HTML/TagSoup/Options.o )
[ 7 of 13] Compiling Text.HTML.TagSoup.Implementation ( Text/HTML/TagSoup/Implementation.hs, dist/build/Text/HTML/TagSoup/Implementation.o )
[ 8 of 13] Compiling Text.HTML.TagSoup.Specification ( Text/HTML/TagSoup/Specification.hs, dist/build/Text/HTML/TagSoup/Specification.o )
[ 9 of 13] Compiling Text.HTML.TagSoup.Manual ( Text/HTML/TagSoup/Manual.hs, dist/build/Text/HTML/TagSoup/Manual.o )
[10 of 13] Compiling Text.HTML.TagSoup.Generated ( Text/HTML/TagSoup/Generated.hs, dist/build/Text/HTML/TagSoup/Generated.o )
[11 of 13] Compiling Text.HTML.TagSoup.Render ( Text/HTML/TagSoup/Render.hs, dist/build/Text/HTML/TagSoup/Render.o )
[12 of 13] Compiling Text.HTML.TagSoup.Parser ( Text/HTML/TagSoup/Parser.hs, dist/build/Text/HTML/TagSoup/Parser.o )
[13 of 13] Compiling Text.HTML.TagSoup ( Text/HTML/TagSoup.hs, dist/build/Text/HTML/TagSoup.o )
In-place registering tagsoup-0.13...
Running Haddock for tagsoup-0.13...
Running hscolour for tagsoup-0.13...
Preprocessing library tagsoup-0.13...
Preprocessing library tagsoup-0.13...
Warning: The documentation for the following packages are not installed. No
links will be generated to these packages: text-0.11.2.3
Haddock coverage:
100% ( 7 / 7) in 'Text.HTML.TagSoup.Entity'
100% ( 3 / 3) in 'Text.StringLike'
81% ( 22 / 27) in 'Text.HTML.TagSoup.Type'
50% ( 9 / 18) in 'Text.HTML.TagSoup.Match'
67% ( 4 / 6) in 'Text.HTML.TagSoup.Tree'
83% ( 5 / 6) in 'Text.HTML.TagSoup.Options'
0% ( 0 / 32) in 'Text.HTML.TagSoup.Implementation'
0% ( 0 / 2) in 'Text.HTML.TagSoup.Specification'
0% ( 0 / 2) in 'Text.HTML.TagSoup.Manual'
0% ( 0 / 2) in 'Text.HTML.TagSoup.Generated'
100% ( 6 / 6) in 'Text.HTML.TagSoup.Render'
86% ( 6 / 7) in 'Text.HTML.TagSoup.Parser'
100% ( 39 / 39) in 'Text.HTML.TagSoup'
Warning: Text.StringLike: could not find link destinations for:
Data.Text.Internal.Text Data.Text.Lazy.Internal.Text
Documentation created: dist/doc/html/tagsoup/index.html
Installing library in
/srv/hackage/var/build/tmp-install/lib/x86_64-linux-ghc-7.6.3/tagsoup-0.13
Registering tagsoup-0.13...
Installed tagsoup-0.13
Downloading bio-0.3.3.1...
Configuring bio-0.3.3.1...
Building bio-0.3.3.1...
Preprocessing library bio-0.3.3.1...
Bio/Alignment/AlignData.hs:15:12: Warning:
-fglasgow-exts is deprecated: Use individual extensions instead
[ 1 of 22] Compiling Bio.Util.Parsex ( Bio/Util/Parsex.hs, dist/build/Bio/Util/Parsex.o )
Bio/Util/Parsex.hs:17:15: Warning:
A do-notation statement discarded a result of type State [Char] ().
Suppress this warning by saying "_ <- setParserState (state)",
or by using the flag -fno-warn-unused-do-bind
[ 2 of 22] Compiling Bio.Clustering ( Bio/Clustering.hs, dist/build/Bio/Clustering.o )
[ 3 of 22] Compiling Bio.Util ( Bio/Util.hs, dist/build/Bio/Util.o )
Bio/Util.hs:13:1: Warning:
Top-level binding with no type signature:
Bio.Util.lines :: B.ByteString -> [B.ByteString]
Bio/Util.hs:13:9: Warning:
Pattern match(es) are non-exhaustive
In a case alternative:
Patterns not matched:
ghc-prim:GHC.Types.I# #x with #x `notElem` [1#, 0#]
Bio/Util.hs:15:1: Warning:
Top-level binding with no type signature:
mylines :: B.ByteString -> [B.ByteString]
[ 4 of 22] Compiling Bio.Alignment.BlastData ( Bio/Alignment/BlastData.hs, dist/build/Bio/Alignment/BlastData.o )
[ 5 of 22] Compiling Bio.Alignment.BlastFlat ( Bio/Alignment/BlastFlat.hs, dist/build/Bio/Alignment/BlastFlat.o )
[ 6 of 22] Compiling Bio.Alignment.Blast ( Bio/Alignment/Blast.hs, dist/build/Bio/Alignment/Blast.o )
Bio/Alignment/Blast.hs:39:1: Warning:
Top-level binding with no type signature: str_query :: ByteString
Bio/Alignment/Blast.hs:40:1: Warning:
Top-level binding with no type signature: str_gt :: ByteString
Bio/Alignment/Blast.hs:41:1: Warning:
Top-level binding with no type signature: str_score :: ByteString
Bio/Alignment/Blast.hs:42:1: Warning:
Top-level binding with no type signature: str_refer :: ByteString
Bio/Alignment/Blast.hs:43:1: Warning:
Top-level binding with no type signature: str_datab :: ByteString
Bio/Alignment/Blast.hs:44:1: Warning:
Top-level binding with no type signature: str_search :: ByteString
Bio/Alignment/Blast.hs:74:1: Warning:
Top-level binding with no type signature:
parse_preamble :: [ByteString] -> BlastResult
Bio/Alignment/Blast.hs:74:1: Warning:
Pattern match(es) are non-exhaustive
In an equation for `parse_preamble': Patterns not matched: []
Bio/Alignment/Blast.hs:84:1: Warning:
Top-level binding with no type signature:
parse_query :: [ByteString] -> BlastRecord
Bio/Alignment/Blast.hs:86:275: Warning:
Defaulting the following constraint(s) to type `Integer'
(Num a0)
arising from the literal `86' at Bio/Alignment/Blast.hs:86:275-276
(Show a0)
arising from a use of `show' at Bio/Alignment/Blast.hs:86:270-273
In the first argument of `show', namely `86'
In the second argument of `(++)', namely `show 86'
In the second argument of `(++)', namely `" line: " ++ show 86'
Bio/Alignment/Blast.hs:86:416: Warning:
Defaulting the following constraint(s) to type `Integer'
(Num a0)
arising from the literal `86' at Bio/Alignment/Blast.hs:86:416-417
(Show a0)
arising from a use of `show' at Bio/Alignment/Blast.hs:86:411-414
In the first argument of `show', namely `86'
In the second argument of `(++)', namely `show 86'
In the second argument of `(++)', namely `" line: " ++ show 86'
Bio/Alignment/Blast.hs:90:1: Warning:
Top-level binding with no type signature:
parse_hit :: [ByteString] -> BlastHit
Bio/Alignment/Blast.hs:95:1: Warning:
Top-level binding with no type signature:
parse_match :: [ByteString] -> BlastMatch
Bio/Alignment/Blast.hs:95:1: Warning:
Pattern match(es) are non-exhaustive
In an equation for `parse_match':
Patterns not matched:
[]
[_]
[_, _]
Bio/Alignment/Blast.hs:99:255: Warning:
Defaulting the following constraint(s) to type `Integer'
(Num a0)
arising from the literal `99' at Bio/Alignment/Blast.hs:99:255-256
(Show a0)
arising from a use of `show' at Bio/Alignment/Blast.hs:99:250-253
In the first argument of `show', namely `99'
In the second argument of `(++)', namely `show 99'
In the second argument of `(++)', namely `" line: " ++ show 99'
Bio/Alignment/Blast.hs:99:396: Warning:
Defaulting the following constraint(s) to type `Integer'
(Num a0)
arising from the literal `99' at Bio/Alignment/Blast.hs:99:396-397
(Show a0)
arising from a use of `show' at Bio/Alignment/Blast.hs:99:391-394
In the first argument of `show', namely `99'
In the second argument of `(++)', namely `show 99'
In the second argument of `(++)', namely `" line: " ++ show 99'
Bio/Alignment/Blast.hs:100:256: Warning:
Defaulting the following constraint(s) to type `Integer'
(Num a0)
arising from the literal `100'
at Bio/Alignment/Blast.hs:100:256-258
(Show a0)
arising from a use of `show' at Bio/Alignment/Blast.hs:100:251-254
In the first argument of `show', namely `100'
In the second argument of `(++)', namely `show 100'
In the second argument of `(++)', namely `" line: " ++ show 100'
Bio/Alignment/Blast.hs:100:398: Warning:
Defaulting the following constraint(s) to type `Integer'
(Num a0)
arising from the literal `100'
at Bio/Alignment/Blast.hs:100:398-400
(Show a0)
arising from a use of `show' at Bio/Alignment/Blast.hs:100:393-396
In the first argument of `show', namely `100'
In the second argument of `(++)', namely `show 100'
In the second argument of `(++)', namely `" line: " ++ show 100'
Bio/Alignment/Blast.hs:102:263: Warning:
Defaulting the following constraint(s) to type `Integer'
(Num a0)
arising from the literal `102'
at Bio/Alignment/Blast.hs:102:263-265
(Show a0)
arising from a use of `show' at Bio/Alignment/Blast.hs:102:258-261
In the first argument of `show', namely `102'
In the second argument of `(++)', namely `show 102'
In the second argument of `(++)', namely `" line: " ++ show 102'
Bio/Alignment/Blast.hs:102:405: Warning:
Defaulting the following constraint(s) to type `Integer'
(Num a0)
arising from the literal `102'
at Bio/Alignment/Blast.hs:102:405-407
(Show a0)
arising from a use of `show' at Bio/Alignment/Blast.hs:102:400-403
In the first argument of `show', namely `102'
In the second argument of `(++)', namely `show 102'
In the second argument of `(++)', namely `" line: " ++ show 102'
Bio/Alignment/Blast.hs:102:650: Warning:
Defaulting the following constraint(s) to type `Integer'
(Num a0)
arising from the literal `102'
at Bio/Alignment/Blast.hs:102:650-652
(Show a0)
arising from a use of `show' at Bio/Alignment/Blast.hs:102:645-648
In the first argument of `show', namely `102'
In the second argument of `(++)', namely `show 102'
In the second argument of `(++)', namely `" line: " ++ show 102'
Bio/Alignment/Blast.hs:102:792: Warning:
Defaulting the following constraint(s) to type `Integer'
(Num a0)
arising from the literal `102'
at Bio/Alignment/Blast.hs:102:792-794
(Show a0)
arising from a use of `show' at Bio/Alignment/Blast.hs:102:787-790
In the first argument of `show', namely `102'
In the second argument of `(++)', namely `show 102'
In the second argument of `(++)', namely `" line: " ++ show 102'
[ 7 of 22] Compiling Bio.Alignment.BlastXML ( Bio/Alignment/BlastXML.hs, dist/build/Bio/Alignment/BlastXML.o )
Bio/Alignment/BlastXML.hs:37:12:
Expecting one more argument to `Tag'
In the type signature for `xml2br':
xml2br :: [Tag] -> [[Tag]] -> BlastResult
Bio/Alignment/BlastXML.hs:50:15:
Expecting one more argument to `Tag'
In the type signature for `iter2rec':
iter2rec :: [[Tag]] -> BlastRecord
Bio/Alignment/BlastXML.hs:59:13:
Expecting one more argument to `Tag'
In the type signature for `hit2hit': hit2hit :: [Tag] -> BlastHit
Bio/Alignment/BlastXML.hs:67:15:
Expecting one more argument to `Tag'
In the type signature for `hsp2match':
hsp2match :: [Tag] -> BlastMatch
Failed to install bio-0.3.3.1
cabal: Error: some packages failed to install:
bio-0.3.3.1 failed during the building phase. The exception was:
ExitFailure 1
Test log
No test log was submitted for this report.