Resolving dependencies... Configuring QuickCheck-1.2.0.1... Building QuickCheck-1.2.0.1... Preprocessing library QuickCheck-1.2.0.1... [1 of 8] Compiling Test.QuickCheck ( Test/QuickCheck.hs, dist/build/Test/QuickCheck.o ) [2 of 8] Compiling Test.QuickCheck.Batch ( Test/QuickCheck/Batch.hs, dist/build/Test/QuickCheck/Batch.o ) [3 of 8] Compiling Test.QuickCheck.Utils ( Test/QuickCheck/Utils.hs, dist/build/Test/QuickCheck/Utils.o ) [4 of 8] Compiling Test.QuickCheck.Poly ( Test/QuickCheck/Poly.hs, dist/build/Test/QuickCheck/Poly.o ) [5 of 8] Compiling Debug.QuickCheck.Poly ( Debug/QuickCheck/Poly.hs, dist/build/Debug/QuickCheck/Poly.o ) [6 of 8] Compiling Debug.QuickCheck.Utils ( Debug/QuickCheck/Utils.hs, dist/build/Debug/QuickCheck/Utils.o ) [7 of 8] Compiling Debug.QuickCheck ( Debug/QuickCheck.hs, dist/build/Debug/QuickCheck.o ) [8 of 8] Compiling Debug.QuickCheck.Batch ( Debug/QuickCheck/Batch.hs, dist/build/Debug/QuickCheck/Batch.o ) In-place registering QuickCheck-1.2.0.1... Running Haddock for QuickCheck-1.2.0.1... Running hscolour for QuickCheck-1.2.0.1... Preprocessing library QuickCheck-1.2.0.1... Preprocessing library QuickCheck-1.2.0.1... Warning: The documentation for the following packages are not installed. No links will be generated to these packages: random-1.0.1.1 Haddock coverage: 3% ( 1 / 33) in 'Test.QuickCheck' 50% ( 4 / 8) in 'Test.QuickCheck.Batch' 17% ( 1 / 6) in 'Test.QuickCheck.Utils' 14% ( 1 / 7) in 'Test.QuickCheck.Poly' 100% ( 2 / 2) in 'Debug.QuickCheck.Poly' 100% ( 2 / 2) in 'Debug.QuickCheck.Utils' 100% ( 2 / 2) in 'Debug.QuickCheck.Batch' 100% ( 2 / 2) in 'Debug.QuickCheck' Warning: Test.QuickCheck: could not find link destinations for: System.Random.Random System.Random.StdGen Warning: Test.QuickCheck.Poly: could not find link destinations for: Test.QuickCheck.Poly.Poly Test.QuickCheck.Poly.ALPHA_ Test.QuickCheck.Poly.BETA_ Test.QuickCheck.Poly.GAMMA_ Test.QuickCheck.Poly.OrdALPHA_ Test.QuickCheck.Poly.OrdBETA_ Test.QuickCheck.Poly.OrdGAMMA_ Documentation created: dist/doc/html/QuickCheck/index.html Installing library in /srv/hackage/var/build/tmp-install/lib/x86_64-linux-ghc-7.6.3/QuickCheck-1.2.0.1 Registering QuickCheck-1.2.0.1... Installed QuickCheck-1.2.0.1 Downloading interlude-0.1.2... Configuring interlude-0.1.2... Building interlude-0.1.2... Preprocessing library interlude-0.1.2... [1 of 1] Compiling Interlude ( Interlude.hs, dist/build/Interlude.o ) In-place registering interlude-0.1.2... Running Haddock for interlude-0.1.2... Running hscolour for interlude-0.1.2... Preprocessing library interlude-0.1.2... Preprocessing library interlude-0.1.2... Haddock coverage: 67% ( 2 / 3) in 'Interlude' Documentation created: dist/doc/html/interlude/index.html Installing library in /srv/hackage/var/build/tmp-install/lib/x86_64-linux-ghc-7.6.3/interlude-0.1.2 Registering interlude-0.1.2... Installed interlude-0.1.2 Configuring parallel-3.2.0.4... Building parallel-3.2.0.4... Preprocessing library parallel-3.2.0.4... [1 of 3] Compiling Control.Parallel ( Control/Parallel.hs, dist/build/Control/Parallel.o ) [2 of 3] Compiling Control.Seq ( Control/Seq.hs, dist/build/Control/Seq.o ) [3 of 3] Compiling Control.Parallel.Strategies ( Control/Parallel/Strategies.hs, dist/build/Control/Parallel/Strategies.o ) In-place registering parallel-3.2.0.4... Running Haddock for parallel-3.2.0.4... Running hscolour for parallel-3.2.0.4... Preprocessing library parallel-3.2.0.4... Preprocessing library parallel-3.2.0.4... Haddock coverage: 100% ( 3 / 3) in 'Control.Parallel' 72% ( 21 / 29) in 'Control.Seq' 81% ( 68 / 84) in 'Control.Parallel.Strategies' Documentation created: dist/doc/html/parallel/index.html Installing library in /srv/hackage/var/build/tmp-install/lib/x86_64-linux-ghc-7.6.3/parallel-3.2.0.4 Registering parallel-3.2.0.4... Installed parallel-3.2.0.4 Configuring tagsoup-0.13... Building tagsoup-0.13... Preprocessing library tagsoup-0.13... [ 1 of 13] Compiling Text.HTML.TagSoup.Entity ( Text/HTML/TagSoup/Entity.hs, dist/build/Text/HTML/TagSoup/Entity.o ) [ 2 of 13] Compiling Text.StringLike ( Text/StringLike.hs, dist/build/Text/StringLike.o ) [ 3 of 13] Compiling Text.HTML.TagSoup.Type ( Text/HTML/TagSoup/Type.hs, dist/build/Text/HTML/TagSoup/Type.o ) [ 4 of 13] Compiling Text.HTML.TagSoup.Match ( Text/HTML/TagSoup/Match.hs, dist/build/Text/HTML/TagSoup/Match.o ) [ 5 of 13] Compiling Text.HTML.TagSoup.Tree ( Text/HTML/TagSoup/Tree.hs, dist/build/Text/HTML/TagSoup/Tree.o ) [ 6 of 13] Compiling Text.HTML.TagSoup.Options ( Text/HTML/TagSoup/Options.hs, dist/build/Text/HTML/TagSoup/Options.o ) [ 7 of 13] Compiling Text.HTML.TagSoup.Implementation ( Text/HTML/TagSoup/Implementation.hs, dist/build/Text/HTML/TagSoup/Implementation.o ) [ 8 of 13] Compiling Text.HTML.TagSoup.Specification ( Text/HTML/TagSoup/Specification.hs, dist/build/Text/HTML/TagSoup/Specification.o ) [ 9 of 13] Compiling Text.HTML.TagSoup.Manual ( Text/HTML/TagSoup/Manual.hs, dist/build/Text/HTML/TagSoup/Manual.o ) [10 of 13] Compiling Text.HTML.TagSoup.Generated ( Text/HTML/TagSoup/Generated.hs, dist/build/Text/HTML/TagSoup/Generated.o ) [11 of 13] Compiling Text.HTML.TagSoup.Render ( Text/HTML/TagSoup/Render.hs, dist/build/Text/HTML/TagSoup/Render.o ) [12 of 13] Compiling Text.HTML.TagSoup.Parser ( Text/HTML/TagSoup/Parser.hs, dist/build/Text/HTML/TagSoup/Parser.o ) [13 of 13] Compiling Text.HTML.TagSoup ( Text/HTML/TagSoup.hs, dist/build/Text/HTML/TagSoup.o ) In-place registering tagsoup-0.13... Running Haddock for tagsoup-0.13... Running hscolour for tagsoup-0.13... Preprocessing library tagsoup-0.13... Preprocessing library tagsoup-0.13... Warning: The documentation for the following packages are not installed. No links will be generated to these packages: text-0.11.2.3 Haddock coverage: 100% ( 7 / 7) in 'Text.HTML.TagSoup.Entity' 100% ( 3 / 3) in 'Text.StringLike' 81% ( 22 / 27) in 'Text.HTML.TagSoup.Type' 50% ( 9 / 18) in 'Text.HTML.TagSoup.Match' 67% ( 4 / 6) in 'Text.HTML.TagSoup.Tree' 83% ( 5 / 6) in 'Text.HTML.TagSoup.Options' 0% ( 0 / 32) in 'Text.HTML.TagSoup.Implementation' 0% ( 0 / 2) in 'Text.HTML.TagSoup.Specification' 0% ( 0 / 2) in 'Text.HTML.TagSoup.Manual' 0% ( 0 / 2) in 'Text.HTML.TagSoup.Generated' 100% ( 6 / 6) in 'Text.HTML.TagSoup.Render' 86% ( 6 / 7) in 'Text.HTML.TagSoup.Parser' 100% ( 39 / 39) in 'Text.HTML.TagSoup' Warning: Text.StringLike: could not find link destinations for: Data.Text.Internal.Text Data.Text.Lazy.Internal.Text Documentation created: dist/doc/html/tagsoup/index.html Installing library in /srv/hackage/var/build/tmp-install/lib/x86_64-linux-ghc-7.6.3/tagsoup-0.13 Registering tagsoup-0.13... Installed tagsoup-0.13 Downloading bio-0.3.3.1... Configuring bio-0.3.3.1... Building bio-0.3.3.1... Preprocessing library bio-0.3.3.1... Bio/Alignment/AlignData.hs:15:12: Warning: -fglasgow-exts is deprecated: Use individual extensions instead [ 1 of 22] Compiling Bio.Util.Parsex ( Bio/Util/Parsex.hs, dist/build/Bio/Util/Parsex.o ) Bio/Util/Parsex.hs:17:15: Warning: A do-notation statement discarded a result of type State [Char] (). Suppress this warning by saying "_ <- setParserState (state)", or by using the flag -fno-warn-unused-do-bind [ 2 of 22] Compiling Bio.Clustering ( Bio/Clustering.hs, dist/build/Bio/Clustering.o ) [ 3 of 22] Compiling Bio.Util ( Bio/Util.hs, dist/build/Bio/Util.o ) Bio/Util.hs:13:1: Warning: Top-level binding with no type signature: Bio.Util.lines :: B.ByteString -> [B.ByteString] Bio/Util.hs:13:9: Warning: Pattern match(es) are non-exhaustive In a case alternative: Patterns not matched: ghc-prim:GHC.Types.I# #x with #x `notElem` [1#, 0#] Bio/Util.hs:15:1: Warning: Top-level binding with no type signature: mylines :: B.ByteString -> [B.ByteString] [ 4 of 22] Compiling Bio.Alignment.BlastData ( Bio/Alignment/BlastData.hs, dist/build/Bio/Alignment/BlastData.o ) [ 5 of 22] Compiling Bio.Alignment.BlastFlat ( Bio/Alignment/BlastFlat.hs, dist/build/Bio/Alignment/BlastFlat.o ) [ 6 of 22] Compiling Bio.Alignment.Blast ( Bio/Alignment/Blast.hs, dist/build/Bio/Alignment/Blast.o ) Bio/Alignment/Blast.hs:39:1: Warning: Top-level binding with no type signature: str_query :: ByteString Bio/Alignment/Blast.hs:40:1: Warning: Top-level binding with no type signature: str_gt :: ByteString Bio/Alignment/Blast.hs:41:1: Warning: Top-level binding with no type signature: str_score :: ByteString Bio/Alignment/Blast.hs:42:1: Warning: Top-level binding with no type signature: str_refer :: ByteString Bio/Alignment/Blast.hs:43:1: Warning: Top-level binding with no type signature: str_datab :: ByteString Bio/Alignment/Blast.hs:44:1: Warning: Top-level binding with no type signature: str_search :: ByteString Bio/Alignment/Blast.hs:74:1: Warning: Top-level binding with no type signature: parse_preamble :: [ByteString] -> BlastResult Bio/Alignment/Blast.hs:74:1: Warning: Pattern match(es) are non-exhaustive In an equation for `parse_preamble': Patterns not matched: [] Bio/Alignment/Blast.hs:84:1: Warning: Top-level binding with no type signature: parse_query :: [ByteString] -> BlastRecord Bio/Alignment/Blast.hs:86:275: Warning: Defaulting the following constraint(s) to type `Integer' (Num a0) arising from the literal `86' at Bio/Alignment/Blast.hs:86:275-276 (Show a0) arising from a use of `show' at Bio/Alignment/Blast.hs:86:270-273 In the first argument of `show', namely `86' In the second argument of `(++)', namely `show 86' In the second argument of `(++)', namely `" line: " ++ show 86' Bio/Alignment/Blast.hs:86:416: Warning: Defaulting the following constraint(s) to type `Integer' (Num a0) arising from the literal `86' at Bio/Alignment/Blast.hs:86:416-417 (Show a0) arising from a use of `show' at Bio/Alignment/Blast.hs:86:411-414 In the first argument of `show', namely `86' In the second argument of `(++)', namely `show 86' In the second argument of `(++)', namely `" line: " ++ show 86' Bio/Alignment/Blast.hs:90:1: Warning: Top-level binding with no type signature: parse_hit :: [ByteString] -> BlastHit Bio/Alignment/Blast.hs:95:1: Warning: Top-level binding with no type signature: parse_match :: [ByteString] -> BlastMatch Bio/Alignment/Blast.hs:95:1: Warning: Pattern match(es) are non-exhaustive In an equation for `parse_match': Patterns not matched: [] [_] [_, _] Bio/Alignment/Blast.hs:99:255: Warning: Defaulting the following constraint(s) to type `Integer' (Num a0) arising from the literal `99' at Bio/Alignment/Blast.hs:99:255-256 (Show a0) arising from a use of `show' at Bio/Alignment/Blast.hs:99:250-253 In the first argument of `show', namely `99' In the second argument of `(++)', namely `show 99' In the second argument of `(++)', namely `" line: " ++ show 99' Bio/Alignment/Blast.hs:99:396: Warning: Defaulting the following constraint(s) to type `Integer' (Num a0) arising from the literal `99' at Bio/Alignment/Blast.hs:99:396-397 (Show a0) arising from a use of `show' at Bio/Alignment/Blast.hs:99:391-394 In the first argument of `show', namely `99' In the second argument of `(++)', namely `show 99' In the second argument of `(++)', namely `" line: " ++ show 99' Bio/Alignment/Blast.hs:100:256: Warning: Defaulting the following constraint(s) to type `Integer' (Num a0) arising from the literal `100' at Bio/Alignment/Blast.hs:100:256-258 (Show a0) arising from a use of `show' at Bio/Alignment/Blast.hs:100:251-254 In the first argument of `show', namely `100' In the second argument of `(++)', namely `show 100' In the second argument of `(++)', namely `" line: " ++ show 100' Bio/Alignment/Blast.hs:100:398: Warning: Defaulting the following constraint(s) to type `Integer' (Num a0) arising from the literal `100' at Bio/Alignment/Blast.hs:100:398-400 (Show a0) arising from a use of `show' at Bio/Alignment/Blast.hs:100:393-396 In the first argument of `show', namely `100' In the second argument of `(++)', namely `show 100' In the second argument of `(++)', namely `" line: " ++ show 100' Bio/Alignment/Blast.hs:102:263: Warning: Defaulting the following constraint(s) to type `Integer' (Num a0) arising from the literal `102' at Bio/Alignment/Blast.hs:102:263-265 (Show a0) arising from a use of `show' at Bio/Alignment/Blast.hs:102:258-261 In the first argument of `show', namely `102' In the second argument of `(++)', namely `show 102' In the second argument of `(++)', namely `" line: " ++ show 102' Bio/Alignment/Blast.hs:102:405: Warning: Defaulting the following constraint(s) to type `Integer' (Num a0) arising from the literal `102' at Bio/Alignment/Blast.hs:102:405-407 (Show a0) arising from a use of `show' at Bio/Alignment/Blast.hs:102:400-403 In the first argument of `show', namely `102' In the second argument of `(++)', namely `show 102' In the second argument of `(++)', namely `" line: " ++ show 102' Bio/Alignment/Blast.hs:102:650: Warning: Defaulting the following constraint(s) to type `Integer' (Num a0) arising from the literal `102' at Bio/Alignment/Blast.hs:102:650-652 (Show a0) arising from a use of `show' at Bio/Alignment/Blast.hs:102:645-648 In the first argument of `show', namely `102' In the second argument of `(++)', namely `show 102' In the second argument of `(++)', namely `" line: " ++ show 102' Bio/Alignment/Blast.hs:102:792: Warning: Defaulting the following constraint(s) to type `Integer' (Num a0) arising from the literal `102' at Bio/Alignment/Blast.hs:102:792-794 (Show a0) arising from a use of `show' at Bio/Alignment/Blast.hs:102:787-790 In the first argument of `show', namely `102' In the second argument of `(++)', namely `show 102' In the second argument of `(++)', namely `" line: " ++ show 102' [ 7 of 22] Compiling Bio.Alignment.BlastXML ( Bio/Alignment/BlastXML.hs, dist/build/Bio/Alignment/BlastXML.o ) Bio/Alignment/BlastXML.hs:37:12: Expecting one more argument to `Tag' In the type signature for `xml2br': xml2br :: [Tag] -> [[Tag]] -> BlastResult Bio/Alignment/BlastXML.hs:50:15: Expecting one more argument to `Tag' In the type signature for `iter2rec': iter2rec :: [[Tag]] -> BlastRecord Bio/Alignment/BlastXML.hs:59:13: Expecting one more argument to `Tag' In the type signature for `hit2hit': hit2hit :: [Tag] -> BlastHit Bio/Alignment/BlastXML.hs:67:15: Expecting one more argument to `Tag' In the type signature for `hsp2match': hsp2match :: [Tag] -> BlastMatch Failed to install bio-0.3.3.1 cabal: Error: some packages failed to install: bio-0.3.3.1 failed during the building phase. The exception was: ExitFailure 1