bio-0.3.5: A bioinformatics librarySource codeContentsIndex
Bio.GFF3.Feature
Documentation
data GFFAttr Source
Constructors
GFFAttr
attrTag :: !ByteString
attrValues :: ![ByteString]
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data Feature Source
Constructors
Feature
seqid :: !ByteString
source :: !ByteString
ftype :: !ByteString
start :: !Offset
end :: !Offset
score :: !(Maybe Double)
strand :: !(Maybe Strand)
phase :: !(Maybe Offset)
attributes :: ![GFFAttr]
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length :: Feature -> OffsetSource
parse :: (Error e, MonadError e m) => ByteString -> m FeatureSource
unparse :: Feature -> ByteStringSource
parseWithFasta :: (Error e, MonadError e m) => ByteString -> m ([Feature], [ByteString])Source
attrByTag :: ByteString -> Feature -> [ByteString]Source
ids :: Feature -> [ByteString]Source
parentIds :: Feature -> [ByteString]Source
contigLoc :: Feature -> ContigLocSource
loc :: Feature -> LocSource
seqLoc :: Feature -> SeqLocSource
name :: (Error e, MonadError e m) => Feature -> m SeqNameSource
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