bio-0.3.5: A bioinformatics library
Source code
Contents
Index
Bio.GFF3.FeatureHierSequences
Documentation
data
FeatureHierSequences
Source
Instances
Show
FeatureHierSequences
features
::
FeatureHierSequences
->
Set
Feature
Source
sequences
::
FeatureHierSequences
-> [
Sequence
]
Source
fromLists
:: (
Error
e,
MonadError
e m) => [
Feature
] -> [
Sequence
] -> m
FeatureHierSequences
Source
parse
:: (
Error
e,
MonadError
e m) =>
ByteString
-> m
FeatureHierSequences
Source
lookupId
:: (
Error
e,
MonadError
e m) =>
FeatureHierSequences
->
SeqName
-> m
Feature
Source
parents
::
FeatureHierSequences
->
Feature
-> [
Feature
]
Source
children
::
FeatureHierSequences
->
Feature
-> [
Feature
]
Source
seqData
:: (
Error
e,
MonadError
e m) =>
FeatureHierSequences
->
SeqLoc
-> m
SeqData
Source
getSequence
:: (
Error
e,
MonadError
e m) =>
FeatureHierSequences
->
SeqName
-> m
SeqData
Source
featureSequence
:: (
Error
e,
MonadError
e m) =>
FeatureHierSequences
->
Feature
-> m
Sequence
Source
runGFF
::
FilePath
->
ErrorT
String
(
Reader
FeatureHierSequences
) a ->
ErrorT
String
IO
a
Source
runGFFIO
::
FilePath
->
ErrorT
String
(
ReaderT
FeatureHierSequences
IO
) a ->
ErrorT
String
IO
a
Source
asksGFF
:: (
Error
e,
MonadError
e m,
MonadReader
FeatureHierSequences
m) => (
FeatureHierSequences
-> a -> m b) -> a -> m b
Source
Produced by
Haddock
version 2.4.2