bio-0.4.5: A bioinformatics librarySource codeContentsIndex
Multiple alignments.
progressive :: (Sequence a -> Sequence a -> (Double, EditList)) -> [Sequence a] -> [String]
indirect :: EditList -> EditList -> EditList
progressive :: (Sequence a -> Sequence a -> (Double, EditList)) -> [Sequence a] -> [String]Source
Progressive multiple alignment. Calculate a tree from agglomerative clustering, then align at each branch going bottom up. Returns a list of columns (rows?).
indirect :: EditList -> EditList -> EditListSource
Derive alignments indirectly, i.e. calculate A|C using alignments A|B and B|C. This is central for Coffee evaluation of alignments, and T-Coffee construction of alignments.
Produced by Haddock version 2.6.1