bio-0.4.5: A bioinformatics library Contents Index

A B C D E F G H I K L M N O P Q R S T U V W X Y ! ?

Index (P)

P Bio.Util.TestBase packFlows Bio.Sequence.SFF pairend Bio.Alignment.Soap pam30 Bio.Alignment.Matrices pam70 Bio.Alignment.Matrices parentIds Bio.GFF3.Feature parents 1 (Function) Bio.GFF3.FeatureHier 2 (Function) Bio.GFF3.FeatureHierSequences parentsM Bio.GFF3.FeatureHier parse 1 (Function) Bio.Alignment.Blast 2 (Function) Bio.Sequence.FastQ 3 (Function) Bio.Alignment.Bowtie 4 (Function) Bio.Alignment.Soap 5 (Function) Bio.GFF3.Feature 6 (Function) Bio.GFF3.FeatureHierSequences parseMismatch Bio.Alignment.Soap parsePSL Bio.Alignment.PSL parseWithFasta Bio.GFF3.Feature perSeq Bio.Location.OnSeq perSeqUpdate Bio.Location.OnSeq phase Bio.GFF3.Feature Phe Bio.Sequence.SeqData, Bio.Sequence Plus Bio.Alignment.BlastData, Bio.Alignment.BlastFlat polar Bio.Sequence.AminoProperties Pos 1 (Type/Class) Bio.Location.Position 2 (Data Constructor) Bio.Location.Position posInto 1 (Function) Bio.Location.ContigLocation 2 (Function) Bio.Location.Location positive Bio.Sequence.AminoProperties posOutof 1 (Function) Bio.Location.ContigLocation 2 (Function) Bio.Location.Location Pro Bio.Sequence.SeqData, Bio.Sequence Proc Bio.Sequence.GeneOntology, Bio.Sequence.GOA progressive Bio.Alignment.Multiple Protein Bio.Util.TestBase PSL 1 (Type/Class) Bio.Alignment.PSL 2 (Data Constructor) Bio.Alignment.PSL pslHeader Bio.Alignment.PSL ptest Bio.Alignment.ACE putSeqLn Bio.Sequence.SeqData