bio-0.4.6: A bioinformatics library Source code Contents Index

Bio.Sequence.SFF_name

Synopsis

data ReadName = ReadName { date :: (Int, Int, Int) time :: (Int, Int, Int) region :: Int x_loc :: Int y_loc :: Int } decodeReadName :: ByteString -> Maybe ReadName decodeLocation :: ByteString -> Maybe (Int, Int) decodeDate :: ByteString -> Maybe [Int] encodeReadName :: ReadName -> ByteString encodeLocation :: Int -> Int -> ByteString encodeRegion :: Int -> ByteString encodeDate :: (Int, Int, Int) -> (Int, Int, Int) -> ByteString divMods :: Int -> [Int] -> [Int] decode36 :: ByteString -> Maybe Int decCh :: Char -> Maybe Int encode36 :: Int -> ByteString b36 :: UArray Int Char

Documentation

data ReadName Source

Read names encode various information, as per this struct. Constructors ReadName date :: (Int, Int, Int) time :: (Int, Int, Int) region :: Int x_loc :: Int y_loc :: Int Instances Show ReadName

decodeReadName :: ByteString -> Maybe ReadName Source

decodeLocation :: ByteString -> Maybe (Int, Int) Source

decodeDate :: ByteString -> Maybe [Int] Source

encodeReadName :: ReadName -> ByteString Source

encodeLocation :: Int -> Int -> ByteString Source

encodeRegion :: Int -> ByteString Source

encodeDate :: (Int, Int, Int) -> (Int, Int, Int) -> ByteString Source

divMods :: Int -> [Int] -> [Int] Source

decode36 :: ByteString -> Maybe Int Source

decCh :: Char -> Maybe Int Source

encode36 :: Int -> ByteString Source

b36 :: UArray Int Char Source

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