Build #1 for bio-0.5.2
| Package | bio-0.5.2 |
|---|
| Install | BuildFailed |
|---|---|
| Docs | NotTried |
| Tests | NotTried |
| Time submitted | unknown |
|---|---|
| Compiler | ghc-7.6.3 |
| OS | linux |
| Arch | x86_64 |
| Dependencies | tagsoup-0.13, random-1.0.1.1, process-1.1.0.2, parsec-3.1.3, parallel-3.2.0.4, old-time-1.1.0.1, mtl-2.1.2, directory-1.2.0.1, containers-0.5.0.0, bytestring-0.10.0.2, binary-0.4.5, base-4.6.0.1, array-0.4.0.1, QuickCheck-2.6 |
| Flags | -test examples |
Code Coverage
No Code Coverage was submitted for this report.
Build log
[view raw]
Resolving dependencies...
Configuring QuickCheck-2.6...
Building QuickCheck-2.6...
Preprocessing library QuickCheck-2.6...
[ 1 of 13] Compiling Test.QuickCheck.Exception ( Test/QuickCheck/Exception.hs, dist/build/Test/QuickCheck/Exception.o )
[ 2 of 13] Compiling Test.QuickCheck.Text ( Test/QuickCheck/Text.hs, dist/build/Test/QuickCheck/Text.o )
[ 3 of 13] Compiling Test.QuickCheck.State ( Test/QuickCheck/State.hs, dist/build/Test/QuickCheck/State.o )
[ 4 of 13] Compiling Test.QuickCheck.Gen ( Test/QuickCheck/Gen.hs, dist/build/Test/QuickCheck/Gen.o )
[ 5 of 13] Compiling Test.QuickCheck.Arbitrary ( Test/QuickCheck/Arbitrary.hs, dist/build/Test/QuickCheck/Arbitrary.o )
[ 6 of 13] Compiling Test.QuickCheck.Poly ( Test/QuickCheck/Poly.hs, dist/build/Test/QuickCheck/Poly.o )
[ 7 of 13] Compiling Test.QuickCheck.Function ( Test/QuickCheck/Function.hs, dist/build/Test/QuickCheck/Function.o )
[ 8 of 13] Compiling Test.QuickCheck.Modifiers ( Test/QuickCheck/Modifiers.hs, dist/build/Test/QuickCheck/Modifiers.o )
[ 9 of 13] Compiling Test.QuickCheck.Property ( Test/QuickCheck/Property.hs, dist/build/Test/QuickCheck/Property.o )
[10 of 13] Compiling Test.QuickCheck.Test ( Test/QuickCheck/Test.hs, dist/build/Test/QuickCheck/Test.o )
[11 of 13] Compiling Test.QuickCheck.All ( Test/QuickCheck/All.hs, dist/build/Test/QuickCheck/All.o )
[12 of 13] Compiling Test.QuickCheck.Monadic ( Test/QuickCheck/Monadic.hs, dist/build/Test/QuickCheck/Monadic.o )
[13 of 13] Compiling Test.QuickCheck ( Test/QuickCheck.hs, dist/build/Test/QuickCheck.o )
In-place registering QuickCheck-2.6...
Running Haddock for QuickCheck-2.6...
Running hscolour for QuickCheck-2.6...
Preprocessing library QuickCheck-2.6...
Preprocessing library QuickCheck-2.6...
Warning: The documentation for the following packages are not installed. No
links will be generated to these packages: random-1.0.1.1
Haddock coverage:
12% ( 1 / 8) in 'Test.QuickCheck.Exception'
0% ( 0 / 18) in 'Test.QuickCheck.Text'
50% ( 1 / 2) in 'Test.QuickCheck.State'
95% ( 20 / 21) in 'Test.QuickCheck.Gen'
92% ( 23 / 25) in 'Test.QuickCheck.Arbitrary'
14% ( 1 / 7) in 'Test.QuickCheck.Poly'
14% ( 1 / 7) in 'Test.QuickCheck.Function'
92% ( 12 / 13) in 'Test.QuickCheck.Modifiers'
59% ( 34 / 58) in 'Test.QuickCheck.Property'
48% ( 13 / 27) in 'Test.QuickCheck.Test'
100% ( 9 / 9) in 'Test.QuickCheck.All'
7% ( 1 / 15) in 'Test.QuickCheck.Monadic'
93% ( 95 /102) in 'Test.QuickCheck'
Warning: Test.QuickCheck.Text: could not find link destinations for:
Test.QuickCheck.Text.Output
Warning: Test.QuickCheck.State: could not find link destinations for:
System.Random.StdGen
Warning: Test.QuickCheck.Gen: could not find link destinations for:
System.Random.StdGen System.Random.Random
Warning: Test.QuickCheck.Arbitrary: could not find link destinations for:
System.Random.Random
Warning: Test.QuickCheck.Property: could not find link destinations for:
Test.QuickCheck.Exception.AnException
Warning: Test.QuickCheck.Test: could not find link destinations for:
System.Random.StdGen
Warning: Test.QuickCheck: could not find link destinations for:
System.Random.StdGen System.Random.Random
Documentation created: dist/doc/html/QuickCheck/index.html
Installing library in
/srv/hackage/var/build/tmp-install/lib/x86_64-linux-ghc-7.6.3/QuickCheck-2.6
Registering QuickCheck-2.6...
Installed QuickCheck-2.6
Configuring binary-0.4.5...
Building binary-0.4.5...
Preprocessing library binary-0.4.5...
src/Data/Binary/Get.hs:2:16: Warning:
-fglasgow-exts is deprecated: Use individual extensions instead
src/Data/Binary/Builder.hs:2:16: Warning:
-fglasgow-exts is deprecated: Use individual extensions instead
[1 of 4] Compiling Data.Binary.Builder ( src/Data/Binary/Builder.hs, dist/build/Data/Binary/Builder.o )
src/Data/Binary/Builder.hs:60:1: Warning:
The import of `Data.Word' is redundant
except perhaps to import instances from `Data.Word'
To import instances alone, use: import Data.Word()
src/Data/Binary/Builder.hs:70:1: Warning:
The qualified import of `Data.ByteString.Lazy.Internal' is redundant
except perhaps to import instances from `Data.ByteString.Lazy.Internal'
To import instances alone, use: import Data.ByteString.Lazy.Internal()
src/Data/Binary/Builder.hs:168:37: Warning:
In the use of `unsafePerformIO' (imported from Foreign):
Deprecated: "Use System.IO.Unsafe.unsafePerformIO instead; This function will be removed in the next release"
[2 of 4] Compiling Data.Binary.Get ( src/Data/Binary/Get.hs, dist/build/Data/Binary/Get.o )
src/Data/Binary/Get.hs:99:1: Warning:
The import of `GHC.Int' is redundant
except perhaps to import instances from `GHC.Int'
To import instances alone, use: import GHC.Int()
src/Data/Binary/Get.hs:368:15: Warning:
In the use of `unsafeInterleaveST'
(imported from Control.Monad.ST):
Deprecated: "Please import from Control.Monad.ST.Unsafe instead; This will be removed in the next release"
src/Data/Binary/Get.hs:379:48: Warning:
In the use of `unsafeInterleaveST'
(imported from Control.Monad.ST):
Deprecated: "Please import from Control.Monad.ST.Unsafe instead; This will be removed in the next release"
[3 of 4] Compiling Data.Binary.Put ( src/Data/Binary/Put.hs, dist/build/Data/Binary/Put.o )
src/Data/Binary/Put.hs:64:16: Warning:
Ignoring unusable UNPACK pragma on the second argument of `PairS'
In the definition of data constructor `PairS'
In the data declaration for `PairS'
[4 of 4] Compiling Data.Binary ( src/Data/Binary.hs, dist/build/Data/Binary.o )
src/Data/Binary.hs:66:1: Warning:
The import of `System.IO' is redundant
except perhaps to import instances from `System.IO'
To import instances alone, use: import System.IO()
In-place registering binary-0.4.5...
Running Haddock for binary-0.4.5...
Running hscolour for binary-0.4.5...
Preprocessing library binary-0.4.5...
Preprocessing library binary-0.4.5...
src/Data/Binary/Get.hs:2:16: Warning:
-fglasgow-exts is deprecated: Use individual extensions instead
src/Data/Binary/Builder.hs:2:16: Warning:
-fglasgow-exts is deprecated: Use individual extensions instead
src/Data/Binary/Get.hs:2:16: Warning:
-fglasgow-exts is deprecated: Use individual extensions instead
src/Data/Binary/Builder.hs:2:16: Warning:
-fglasgow-exts is deprecated: Use individual extensions instead
src/Data/Binary/Builder.hs:60:1: Warning:
The import of `Data.Word' is redundant
except perhaps to import instances from `Data.Word'
To import instances alone, use: import Data.Word()
src/Data/Binary/Builder.hs:70:1: Warning:
The qualified import of `Data.ByteString.Lazy.Internal' is redundant
except perhaps to import instances from `Data.ByteString.Lazy.Internal'
To import instances alone, use: import Data.ByteString.Lazy.Internal()
src/Data/Binary/Builder.hs:168:37: Warning:
In the use of `unsafePerformIO' (imported from Foreign):
Deprecated: "Use System.IO.Unsafe.unsafePerformIO instead; This function will be removed in the next release"
src/Data/Binary/Get.hs:99:1: Warning:
The import of `GHC.Int' is redundant
except perhaps to import instances from `GHC.Int'
To import instances alone, use: import GHC.Int()
src/Data/Binary/Get.hs:368:15: Warning:
In the use of `unsafeInterleaveST'
(imported from Control.Monad.ST):
Deprecated: "Please import from Control.Monad.ST.Unsafe instead; This will be removed in the next release"
src/Data/Binary/Get.hs:379:48: Warning:
In the use of `unsafeInterleaveST'
(imported from Control.Monad.ST):
Deprecated: "Please import from Control.Monad.ST.Unsafe instead; This will be removed in the next release"
src/Data/Binary/Put.hs:64:16: Warning:
Ignoring unusable UNPACK pragma on the second argument of `PairS'
In the definition of data constructor `PairS'
In the data declaration for `PairS'
src/Data/Binary.hs:66:1: Warning:
The import of `System.IO' is redundant
except perhaps to import instances from `System.IO'
To import instances alone, use: import System.IO()
Haddock coverage:
100% ( 26 / 26) in 'Data.Binary.Builder'
100% ( 37 / 37) in 'Data.Binary.Get'
100% ( 24 / 24) in 'Data.Binary.Put'
100% ( 17 / 17) in 'Data.Binary'
Warning: Data.Binary.Get: could not find link destinations for:
Data.Binary.Get.get
Warning: Data.Binary.Put: could not find link destinations for:
Data.Binary.Put.PairS
Documentation created: dist/doc/html/binary/index.html
Installing library in
/srv/hackage/var/build/tmp-install/lib/x86_64-linux-ghc-7.6.3/binary-0.4.5
Registering binary-0.4.5...
Installed binary-0.4.5
Configuring parallel-3.2.0.4...
Building parallel-3.2.0.4...
Preprocessing library parallel-3.2.0.4...
[1 of 3] Compiling Control.Parallel ( Control/Parallel.hs, dist/build/Control/Parallel.o )
[2 of 3] Compiling Control.Seq ( Control/Seq.hs, dist/build/Control/Seq.o )
[3 of 3] Compiling Control.Parallel.Strategies ( Control/Parallel/Strategies.hs, dist/build/Control/Parallel/Strategies.o )
In-place registering parallel-3.2.0.4...
Running Haddock for parallel-3.2.0.4...
Running hscolour for parallel-3.2.0.4...
Preprocessing library parallel-3.2.0.4...
Preprocessing library parallel-3.2.0.4...
Haddock coverage:
100% ( 3 / 3) in 'Control.Parallel'
72% ( 21 / 29) in 'Control.Seq'
81% ( 68 / 84) in 'Control.Parallel.Strategies'
Documentation created: dist/doc/html/parallel/index.html
Installing library in
/srv/hackage/var/build/tmp-install/lib/x86_64-linux-ghc-7.6.3/parallel-3.2.0.4
Registering parallel-3.2.0.4...
Installed parallel-3.2.0.4
Configuring tagsoup-0.13...
Building tagsoup-0.13...
Preprocessing library tagsoup-0.13...
[ 1 of 13] Compiling Text.HTML.TagSoup.Entity ( Text/HTML/TagSoup/Entity.hs, dist/build/Text/HTML/TagSoup/Entity.o )
[ 2 of 13] Compiling Text.StringLike ( Text/StringLike.hs, dist/build/Text/StringLike.o )
[ 3 of 13] Compiling Text.HTML.TagSoup.Type ( Text/HTML/TagSoup/Type.hs, dist/build/Text/HTML/TagSoup/Type.o )
[ 4 of 13] Compiling Text.HTML.TagSoup.Match ( Text/HTML/TagSoup/Match.hs, dist/build/Text/HTML/TagSoup/Match.o )
[ 5 of 13] Compiling Text.HTML.TagSoup.Tree ( Text/HTML/TagSoup/Tree.hs, dist/build/Text/HTML/TagSoup/Tree.o )
[ 6 of 13] Compiling Text.HTML.TagSoup.Options ( Text/HTML/TagSoup/Options.hs, dist/build/Text/HTML/TagSoup/Options.o )
[ 7 of 13] Compiling Text.HTML.TagSoup.Implementation ( Text/HTML/TagSoup/Implementation.hs, dist/build/Text/HTML/TagSoup/Implementation.o )
[ 8 of 13] Compiling Text.HTML.TagSoup.Specification ( Text/HTML/TagSoup/Specification.hs, dist/build/Text/HTML/TagSoup/Specification.o )
[ 9 of 13] Compiling Text.HTML.TagSoup.Manual ( Text/HTML/TagSoup/Manual.hs, dist/build/Text/HTML/TagSoup/Manual.o )
[10 of 13] Compiling Text.HTML.TagSoup.Generated ( Text/HTML/TagSoup/Generated.hs, dist/build/Text/HTML/TagSoup/Generated.o )
[11 of 13] Compiling Text.HTML.TagSoup.Render ( Text/HTML/TagSoup/Render.hs, dist/build/Text/HTML/TagSoup/Render.o )
[12 of 13] Compiling Text.HTML.TagSoup.Parser ( Text/HTML/TagSoup/Parser.hs, dist/build/Text/HTML/TagSoup/Parser.o )
[13 of 13] Compiling Text.HTML.TagSoup ( Text/HTML/TagSoup.hs, dist/build/Text/HTML/TagSoup.o )
In-place registering tagsoup-0.13...
Running Haddock for tagsoup-0.13...
Running hscolour for tagsoup-0.13...
Preprocessing library tagsoup-0.13...
Preprocessing library tagsoup-0.13...
Warning: The documentation for the following packages are not installed. No
links will be generated to these packages: text-0.11.2.3
Haddock coverage:
100% ( 7 / 7) in 'Text.HTML.TagSoup.Entity'
100% ( 3 / 3) in 'Text.StringLike'
81% ( 22 / 27) in 'Text.HTML.TagSoup.Type'
50% ( 9 / 18) in 'Text.HTML.TagSoup.Match'
67% ( 4 / 6) in 'Text.HTML.TagSoup.Tree'
83% ( 5 / 6) in 'Text.HTML.TagSoup.Options'
0% ( 0 / 32) in 'Text.HTML.TagSoup.Implementation'
0% ( 0 / 2) in 'Text.HTML.TagSoup.Specification'
0% ( 0 / 2) in 'Text.HTML.TagSoup.Manual'
0% ( 0 / 2) in 'Text.HTML.TagSoup.Generated'
100% ( 6 / 6) in 'Text.HTML.TagSoup.Render'
86% ( 6 / 7) in 'Text.HTML.TagSoup.Parser'
100% ( 39 / 39) in 'Text.HTML.TagSoup'
Warning: Text.StringLike: could not find link destinations for:
Data.Text.Internal.Text Data.Text.Lazy.Internal.Text
Documentation created: dist/doc/html/tagsoup/index.html
Installing library in
/srv/hackage/var/build/tmp-install/lib/x86_64-linux-ghc-7.6.3/tagsoup-0.13
Registering tagsoup-0.13...
Installed tagsoup-0.13
Downloading bio-0.5.2...
Configuring bio-0.5.2...
Building bio-0.5.2...
Preprocessing library bio-0.5.2...
[ 1 of 46] Compiling Bio.GFF3.Escape ( Bio/GFF3/Escape.hs, dist/build/Bio/GFF3/Escape.o )
[ 2 of 46] Compiling Bio.Util.Parsex ( Bio/Util/Parsex.hs, dist/build/Bio/Util/Parsex.o )
[ 3 of 46] Compiling Bio.Clustering ( Bio/Clustering.hs, dist/build/Bio/Clustering.o )
[ 4 of 46] Compiling Bio.Alignment.PSL ( Bio/Alignment/PSL.hs, dist/build/Bio/Alignment/PSL.o )
[ 5 of 46] Compiling Bio.Util ( Bio/Util.hs, dist/build/Bio/Util.o )
[ 6 of 46] Compiling Bio.Alignment.BlastData ( Bio/Alignment/BlastData.hs, dist/build/Bio/Alignment/BlastData.o )
[ 7 of 46] Compiling Bio.Alignment.BlastXML ( Bio/Alignment/BlastXML.hs, dist/build/Bio/Alignment/BlastXML.o )
[ 8 of 46] Compiling Bio.Alignment.BlastFlat ( Bio/Alignment/BlastFlat.hs, dist/build/Bio/Alignment/BlastFlat.o )
[ 9 of 46] Compiling Bio.Alignment.Blast ( Bio/Alignment/Blast.hs, dist/build/Bio/Alignment/Blast.o )
[10 of 46] Compiling Bio.Sequence.SFF_name ( Bio/Sequence/SFF_name.hs, dist/build/Bio/Sequence/SFF_name.o )
[11 of 46] Compiling Bio.Sequence.GeneOntology ( Bio/Sequence/GeneOntology.hs, dist/build/Bio/Sequence/GeneOntology.o )
[12 of 46] Compiling Bio.Sequence.KEGG ( Bio/Sequence/KEGG.hs, dist/build/Bio/Sequence/KEGG.o )
[13 of 46] Compiling Bio.Sequence.GOA ( Bio/Sequence/GOA.hs, dist/build/Bio/Sequence/GOA.o )
[14 of 46] Compiling Bio.Sequence.Entropy ( Bio/Sequence/Entropy.hs, dist/build/Bio/Sequence/Entropy.o )
[15 of 46] Compiling Bio.Sequence.SeqData ( Bio/Sequence/SeqData.hs, dist/build/Bio/Sequence/SeqData.o )
[16 of 46] Compiling Bio.Sequence.Fasta ( Bio/Sequence/Fasta.hs, dist/build/Bio/Sequence/Fasta.o )
Bio/Sequence/Fasta.hs:31:1: Warning:
The import of `chr' from module `Data.Char' is redundant
[17 of 46] Compiling Bio.Sequence.FastQ ( Bio/Sequence/FastQ.hs, dist/build/Bio/Sequence/FastQ.o )
[18 of 46] Compiling Bio.Sequence.Phd ( Bio/Sequence/Phd.hs, dist/build/Bio/Sequence/Phd.o )
Bio/Sequence/Phd.hs:33:13: Warning: Defined but not used: `td'
[19 of 46] Compiling Bio.Sequence.TwoBit ( Bio/Sequence/TwoBit.hs, dist/build/Bio/Sequence/TwoBit.o )
Bio/Sequence/TwoBit.hs:90:17: Warning: Defined but not used: `m'
Bio/Sequence/TwoBit.hs:90:19: Warning: Defined but not used: `v'
Bio/Sequence/TwoBit.hs:90:23: Warning: Defined but not used: `r'
Bio/Sequence/TwoBit.hs:108:8: Warning:
This binding for `name' shadows the existing binding
defined at Bio/Sequence/TwoBit.hs:98:24
Bio/Sequence/TwoBit.hs:109:8: Warning:
This binding for `offset' shadows the existing binding
defined at Bio/Sequence/TwoBit.hs:98:46
Bio/Sequence/TwoBit.hs:111:27: Warning:
This binding for `offset' shadows the existing binding
defined at Bio/Sequence/TwoBit.hs:98:46
Bio/Sequence/TwoBit.hs:256:26: Warning:
This binding for `ns' shadows the existing binding
bound at Bio/Sequence/TwoBit.hs:234:8
Bio/Sequence/TwoBit.hs:261:21: Warning:
This binding for `ns' shadows the existing binding
bound at Bio/Sequence/TwoBit.hs:234:8
Bio/Sequence/TwoBit.hs:273:1: Warning: Defined but not used: `toSR'
Bio/Sequence/TwoBit.hs:273:6: Warning: Defined but not used: `bs'
Bio/Sequence/TwoBit.hs:326:32: Warning:
This binding for `ss' shadows the existing binding
bound at Bio/Sequence/TwoBit.hs:323:12
Bio/Sequence/TwoBit.hs:335:42: Warning:
This binding for `length' shadows the existing binding
imported from `Data.List' at Bio/Sequence/TwoBit.hs:34:1-16
(and originally defined in `GHC.List')
Bio/Sequence/TwoBit.hs:354:40: Warning: Defined but not used: `s'
Bio/Sequence/TwoBit.hs:354:42: Warning:
This binding for `ss' shadows the existing binding
bound at Bio/Sequence/TwoBit.hs:323:12
Bio/Sequence/TwoBit.hs:359:40: Warning:
This binding for `ss' shadows the existing binding
bound at Bio/Sequence/TwoBit.hs:323:12
Bio/Sequence/TwoBit.hs:359:51: Warning:
This binding for `seq' shadows the existing binding
imported from `Prelude' at Bio/Sequence/TwoBit.hs:14:8-26
(and originally defined in `ghc-prim:GHC.Prim')
Bio/Sequence/TwoBit.hs:364:29: Warning:
Pattern match(es) are non-exhaustive
In a case alternative:
Patterns not matched:
ghc-prim:GHC.Types.C# #x with #x `notElem` ['T', 'C', 'A', 'G']
Bio/Sequence/TwoBit.hs:373:28: Warning:
This binding for `seq' shadows the existing binding
imported from `Prelude' at Bio/Sequence/TwoBit.hs:14:8-26
(and originally defined in `ghc-prim:GHC.Prim')
Bio/Sequence/TwoBit.hs:400:51: Warning:
Pattern match(es) are non-exhaustive
In a case alternative:
Patterns not matched:
ghc-prim:GHC.Types.I# #x with #x `notElem` [1#, 2#, 3#, 4#]
Bio/Sequence/TwoBit.hs:440:13: Warning:
This binding for `seq' shadows the existing binding
imported from `Prelude' at Bio/Sequence/TwoBit.hs:14:8-26
(and originally defined in `ghc-prim:GHC.Prim')
Bio/Sequence/TwoBit.hs:447:14: Warning:
This binding for `seq' shadows the existing binding
imported from `Prelude' at Bio/Sequence/TwoBit.hs:14:8-26
(and originally defined in `ghc-prim:GHC.Prim')
[20 of 46] Compiling Bio.Sequence.SFF ( Bio/Sequence/SFF.hs, dist/build/Bio/Sequence/SFF.o )
[21 of 46] Compiling Bio.Sequence.SFF_filters ( Bio/Sequence/SFF_filters.hs, dist/build/Bio/Sequence/SFF_filters.o )
Bio/Sequence/SFF_filters.hs:123:1: Warning:
Top-level binding with no type signature: flx_linker :: [Char]
Bio/Sequence/SFF_filters.hs:124:1: Warning:
Top-level binding with no type signature: ti_linker :: [Char]
Bio/Sequence/SFF_filters.hs:132:1: Warning:
Top-level binding with no type signature: rna_adapter :: [Char]
Bio/Sequence/SFF_filters.hs:133:1: Warning:
Top-level binding with no type signature: rna_adapter2 :: [Char]
Bio/Sequence/SFF_filters.hs:134:1: Warning:
Top-level binding with no type signature: rna_adapter3 :: [Char]
Bio/Sequence/SFF_filters.hs:138:1: Warning:
Top-level binding with no type signature: rapid_adapter :: [Char]
Bio/Sequence/SFF_filters.hs:139:1: Warning:
Top-level binding with no type signature: ti_adapter_b :: [Char]
[22 of 46] Compiling Bio.Sequence.HashWord ( Bio/Sequence/HashWord.lhs, dist/build/Bio/Sequence/HashWord.o )
Bio/Sequence/HashWord.lhs:15:1: Warning:
The import of `Data.Int' is redundant
except perhaps to import instances from `Data.Int'
To import instances alone, use: import Data.Int()
Bio/Sequence/HashWord.lhs:146:15: Warning:
Defined but not used: `c1'
Bio/Sequence/HashWord.lhs:146:18: Warning:
Defined but not used: `c2'
Bio/Sequence/HashWord.lhs:146:22: Warning:
Defined but not used: `i'
Bio/Sequence/HashWord.lhs:200:1: Warning:
Top-level binding with no type signature:
k2n' :: forall a a1.
(Integral a, Integral a1, Show a, Show a1) =>
a -> a1 -> [Char]
[23 of 46] Compiling Bio.Sequence.AminoProperties ( Bio/Sequence/AminoProperties.hs, dist/build/Bio/Sequence/AminoProperties.o )
Bio/Sequence/AminoProperties.hs:14:1: Warning:
Top-level binding with no type signature:
oneOf :: [Amino] -> Amino -> Bool
Bio/Sequence/AminoProperties.hs:15:1: Warning:
Top-level binding with no type signature:
or :: forall t. (t -> Bool) -> (t -> Bool) -> t -> Bool
[24 of 46] Compiling Bio.Alignment.AlignData ( Bio/Alignment/AlignData.hs, dist/build/Bio/Alignment/AlignData.o )
Bio/Alignment/AlignData.hs:59:1: Warning:
Top-level binding with no type signature:
showalign :: [Edit] -> [Char]
Bio/Alignment/AlignData.hs:112:9: Warning:
Pattern match(es) are non-exhaustive
In an equation for `mkcol': Patterns not matched: ([], _)
Bio/Alignment/AlignData.hs:121:1: Warning:
Top-level binding with no type signature:
on :: forall t t1 t2.
(t1 -> t1 -> t) -> (t2 -> t1) -> t2 -> t2 -> t
[25 of 46] Compiling Bio.Alignment.Matrices ( Bio/Alignment/Matrices.hs, dist/build/Bio/Alignment/Matrices.o )
[26 of 46] Compiling Bio.Alignment.SAlign ( Bio/Alignment/SAlign.hs, dist/build/Bio/Alignment/SAlign.o )
[27 of 46] Compiling Bio.Alignment.AAlign ( Bio/Alignment/AAlign.hs, dist/build/Bio/Alignment/AAlign.o )
Bio/Alignment/AAlign.hs:40:14: Warning:
This binding for `minf' shadows the existing binding
defined at Bio/Alignment/AAlign.hs:23:1
Bio/Alignment/AAlign.hs:50:1: Warning:
Top-level binding with no type signature:
max' :: forall t t1. Ord t => (t, t1) -> (t, t1) -> (t, t1)
Bio/Alignment/AAlign.hs:51:1: Warning:
Top-level binding with no type signature:
fp :: forall t a. Num t => (t, [a]) -> (t, a) -> (t, [a])
Bio/Alignment/AAlign.hs:64:1: Warning:
Top-level binding with no type signature:
revsnd :: forall t a. (t, [a]) -> (t, [a])
Bio/Alignment/AAlign.hs:68:14: Warning:
This binding for `minf' shadows the existing binding
defined at Bio/Alignment/AAlign.hs:23:1
[28 of 46] Compiling Bio.Alignment.QAlign ( Bio/Alignment/QAlign.hs, dist/build/Bio/Alignment/QAlign.o )
Bio/Alignment/QAlign.hs:70:9: Warning:
Pattern match(es) are non-exhaustive
In an equation for `mkcol': Patterns not matched: (_, [], _)
Bio/Alignment/QAlign.hs:103:72: Warning:
This binding for `x' shadows the existing binding
bound at Bio/Alignment/QAlign.hs:94:15
Bio/Alignment/QAlign.hs:103:86: Warning:
This binding for `y' shadows the existing binding
bound at Bio/Alignment/QAlign.hs:94:17
Bio/Alignment/QAlign.hs:104:73: Warning:
This binding for `x' shadows the existing binding
bound at Bio/Alignment/QAlign.hs:94:15
Bio/Alignment/QAlign.hs:104:87: Warning:
This binding for `y' shadows the existing binding
bound at Bio/Alignment/QAlign.hs:94:17
Bio/Alignment/QAlign.hs:140:11: Warning:
Pattern match(es) are non-exhaustive
In an equation for `overlap_score_select':
Patterns not matched:
[]
[_, _]
_ : (_ : (_ : (_ : _)))
Bio/Alignment/QAlign.hs:145:14: Warning:
This binding for `minf' shadows the existing binding
defined at Bio/Alignment/QAlign.hs:89:1
Bio/Alignment/QAlign.hs:183:11: Warning:
Pattern match(es) are non-exhaustive
In an equation for `overlap_align_select':
Patterns not matched:
[]
[_, _]
_ : (_ : (_ : (_ : _)))
Bio/Alignment/QAlign.hs:188:1: Warning:
Defined but not used: overlap_align'
Bio/Alignment/QAlign.hs:192:11: Warning:
Pattern match(es) are non-exhaustive
In an equation for `overlap_align_select':
Patterns not matched:
[]
[(((_, _), (_, _)), _, _, _), _]
(((_, _), (_, _)), _, _, _) : (_ : (_ : (_ : _)))
Bio/Alignment/QAlign.hs:193:36: Warning:
This binding for `s1' shadows the existing binding
bound at Bio/Alignment/QAlign.hs:188:21
Bio/Alignment/QAlign.hs:193:36: Warning: Defined but not used: `s1'
Bio/Alignment/QAlign.hs:193:39: Warning:
Defined but not used: `es1'
Bio/Alignment/QAlign.hs:193:45: Warning:
This binding for `s2' shadows the existing binding
bound at Bio/Alignment/QAlign.hs:188:24
Bio/Alignment/QAlign.hs:193:45: Warning: Defined but not used: `s2'
Bio/Alignment/QAlign.hs:196:1: Warning:
Top-level binding with no type signature:
revsnd :: forall t a. (t, [a]) -> (t, [a])
Bio/Alignment/QAlign.hs:200:14: Warning:
This binding for `minf' shadows the existing binding
defined at Bio/Alignment/QAlign.hs:89:1
Bio/Alignment/QAlign.hs:208:1: Warning:
Top-level binding with no type signature:
snd' :: forall t t1 t2 t3. (t, t1, t2, t3) -> t1
Bio/Alignment/QAlign.hs:222:7: Warning:
This binding for `or' shadows the existing binding
imported from `Prelude' at Bio/Alignment/QAlign.hs:19:8-27
(and originally defined in `GHC.List')
[29 of 46] Compiling Bio.Alignment.ACE ( Bio/Alignment/ACE.hs, dist/build/Bio/Alignment/ACE.o )
Bio/Alignment/ACE.hs:44:1: Warning:
The import of `readFile'
from module `Data.ByteString.Lazy.Char8' is redundant
[30 of 46] Compiling Bio.Location.OnSeq ( Bio/Location/OnSeq.hs, dist/build/Bio/Location/OnSeq.o )
Bio/Location/OnSeq.hs:21:1: Warning:
The import of `Data.List' is redundant
except perhaps to import instances from `Data.List'
To import instances alone, use: import Data.List()
[31 of 46] Compiling Bio.Location.Strand ( Bio/Location/Strand.hs, dist/build/Bio/Location/Strand.o )
[32 of 46] Compiling Bio.Location.Position ( Bio/Location/Position.hs, dist/build/Bio/Location/Position.o )
Bio/Location/Position.hs:24:1: Warning:
The import of `Data.List' is redundant
except perhaps to import instances from `Data.List'
To import instances alone, use: import Data.List()
[33 of 46] Compiling Bio.Location.ContigLocation ( Bio/Location/ContigLocation.hs, dist/build/Bio/Location/ContigLocation.o )
[34 of 46] Compiling Bio.Location.Location ( Bio/Location/Location.hs, dist/build/Bio/Location/Location.o )
[35 of 46] Compiling Bio.Location.SeqLocation ( Bio/Location/SeqLocation.hs, dist/build/Bio/Location/SeqLocation.o )
[36 of 46] Compiling Bio.Alignment.Bowtie ( Bio/Alignment/Bowtie.hs, dist/build/Bio/Alignment/Bowtie.o )
Bio/Alignment/Bowtie.hs:35:1: Warning:
The import of `Data.Char' is redundant
except perhaps to import instances from `Data.Char'
To import instances alone, use: import Data.Char()
[37 of 46] Compiling Bio.Alignment.Soap ( Bio/Alignment/Soap.hs, dist/build/Bio/Alignment/Soap.o )
[38 of 46] Compiling Bio.Alignment.BED ( Bio/Alignment/BED.hs, dist/build/Bio/Alignment/BED.o )
[39 of 46] Compiling Bio.Location.LocMap ( Bio/Location/LocMap.hs, dist/build/Bio/Location/LocMap.o )
Bio/Location/LocMap.hs:29:1: Warning:
The import of `Data.Maybe' is redundant
except perhaps to import instances from `Data.Maybe'
To import instances alone, use: import Data.Maybe()
Bio/Location/LocMap.hs:50:10: Warning:
Defined but not used: `zonesize'
[40 of 46] Compiling Bio.Location.SeqLocMap ( Bio/Location/SeqLocMap.hs, dist/build/Bio/Location/SeqLocMap.o )
[41 of 46] Compiling Bio.GFF3.Feature ( Bio/GFF3/Feature.hs, dist/build/Bio/GFF3/Feature.o )
[42 of 46] Compiling Bio.GFF3.FeatureHier ( Bio/GFF3/FeatureHier.hs, dist/build/Bio/GFF3/FeatureHier.o )
Bio/GFF3/FeatureHier.hs:18:1: Warning:
The import of `Data.Maybe' is redundant
except perhaps to import instances from `Data.Maybe'
To import instances alone, use: import Data.Maybe()
[43 of 46] Compiling Bio.GFF3.FeatureHierSequences ( Bio/GFF3/FeatureHierSequences.hs, dist/build/Bio/GFF3/FeatureHierSequences.o )
Bio/GFF3/FeatureHierSequences.hs:75:54: Not in scope: `catch'
Failed to install bio-0.5.2
cabal: Error: some packages failed to install:
bio-0.5.2 failed during the building phase. The exception was:
ExitFailure 1
Test log
No test log was submitted for this report.