Simple alignment of sequences
Standard alignment/edit distance
- local_score :: (Num a, Ord a) => SubstMx t a -> a -> Sequence t -> Sequence t -> a
- local_align :: (Num a, Ord a) => SubstMx t a -> a -> Sequence t -> Sequence t -> EditList
- global_score :: (Num a, Ord a) => SubstMx t a -> a -> Sequence t -> Sequence t -> a
- global_align :: (Num a, Ord a) => SubstMx t a -> a -> Sequence t -> Sequence t -> EditList
Smith-Waterman, or locally optimal alignment
local_score :: (Num a, Ord a) => SubstMx t a -> a -> Sequence t -> Sequence t -> aSource
Calculate local edit distance (Smith-Waterman alignment score)