name:                bio-sequence
version:             0.1.0.0
synopsis:            Initial project template from stack
description:         Please see README.md
homepage:            https://github.com/biocad/bio-sequence
license:             BSD3
license-file:        LICENSE
author:              Pavel Yakovlev
maintainer:          yakovlev@biocad.ru
copyright:           Copyright: (c) 2017 Biocad
category:            Bio
build-type:          Simple
extra-source-files:  README.md
cabal-version:       >=1.10

library
  hs-source-dirs:      src
  exposed-modules:     Bio.Sequence
                     , Bio.Sequence.Alignment
                     , Bio.Sequence.Alignment.Matrix
                     , Bio.Sequence.Alignment.Scoring
                     , Bio.Sequence.AminoAcid
                     , Bio.Sequence.Parser.Fasta
                     , Bio.Macro
  other-modules:       Bio.Sequence.Alignment.Internal.Type
                     , Bio.Sequence.Alignment.Internal.Instances
                     , Bio.Sequence.Alignment.Internal.Matrix.Scoring
                     , Bio.Sequence.Alignment.Internal.Matrix.Template
                     , Bio.Sequence.Alignment.Scoring.Similarity
                     , Bio.Sequence.AminoAcid.Internal.Types
                     , Bio.Sequence.Parser.Fasta.Internal.Parser
                     , Bio.Sequence.Parser.Fasta.Internal.Converters
                     , Bio.Macro.Internal.Instances
                     , Bio.Macro.Internal.Types
  build-depends:       base >= 4.7 && < 5
                     , bytestring
                     , array
                     , template-haskell
                     , text
                     , parsec
  ghc-options:         -Wall -O2
  default-language:    Haskell2010

test-suite sequence-test
  type:                exitcode-stdio-1.0
  hs-source-dirs:      test
  main-is:             Spec.hs
  build-depends:       base
                     , bio-sequence
                     , bytestring
                     , hspec
                     , QuickCheck
  ghc-options:         -threaded -rtsopts -with-rtsopts=-N
  default-language:    Haskell2010

test-suite similarity
  type:                exitcode-stdio-1.0
  hs-source-dirs:      test
  main-is:             SpecSimilarity.hs
  build-depends:       base
                     , bio-sequence
                     , bytestring
                     , hspec
                     , QuickCheck
  ghc-options:         -threaded -rtsopts -with-rtsopts=-N
  default-language:    Haskell2010

source-repository head
  type:     git
  location: https://github.com/biocad/bio-sequence