bio-sequence-0.1.0.0: Initial project template from stack

Safe Haskell	None
Language	Haskell2010

Bio.Sequence.Alignment.Matrix

Documentation

class ScoringMatrix a where Source #

Minimal complete definition

Methods

scoring :: a -> Substitution Char Source #

Instances

ScoringMatrix BLOSUM62 Source #
Methods scoring :: BLOSUM62 -> Substitution Char Source #
ScoringMatrix PAM250 Source #
Methods scoring :: PAM250 -> Substitution Char Source #
ScoringMatrix NUC44 Source #
Methods scoring :: NUC44 -> Substitution Char Source #

data BLOSUM62 Source #

Constructors

Instances

Eq BLOSUM62 Source #
Methods (==) :: BLOSUM62 -> BLOSUM62 -> Bool # (/=) :: BLOSUM62 -> BLOSUM62 -> Bool #
Show BLOSUM62 Source #
Methods showsPrec :: Int -> BLOSUM62 -> ShowS # show :: BLOSUM62 -> String # showList :: [BLOSUM62] -> ShowS #
ScoringMatrix BLOSUM62 Source #
Methods scoring :: BLOSUM62 -> Substitution Char Source #

data PAM250 Source #

Constructors

Instances

Eq PAM250 Source #
Methods (==) :: PAM250 -> PAM250 -> Bool # (/=) :: PAM250 -> PAM250 -> Bool #
Show PAM250 Source #
Methods showsPrec :: Int -> PAM250 -> ShowS # show :: PAM250 -> String # showList :: [PAM250] -> ShowS #
ScoringMatrix PAM250 Source #
Methods scoring :: PAM250 -> Substitution Char Source #

data NUC44 Source #

Constructors

Instances

Eq NUC44 Source #
Methods (==) :: NUC44 -> NUC44 -> Bool # (/=) :: NUC44 -> NUC44 -> Bool #
Show NUC44 Source #
Methods showsPrec :: Int -> NUC44 -> ShowS # show :: NUC44 -> String # showList :: [NUC44] -> ShowS #
ScoringMatrix NUC44 Source #
Methods scoring :: NUC44 -> Substitution Char Source #

blosum62 :: Substitution Char Source #

pam250 :: Substitution Char Source #

nuc44 :: Substitution Char Source #

matrix :: QuasiQuoter Source #