Resolving dependencies... Configuring List-0.5.2... Configuring IntervalMap-0.5.2.0... Building IntervalMap-0.5.2.0... Building List-0.5.2... Installed List-0.5.2 Configuring abstract-par-0.3.3... Building abstract-par-0.3.3... Configuring base64-bytestring-1.0.0.1... Installed abstract-par-0.3.3 Building base64-bytestring-1.0.0.1... Configuring byteable-0.1.1... Installed IntervalMap-0.5.2.0 Configuring base-compat-0.9.1... Installed base64-bytestring-1.0.0.1 Building byteable-0.1.1... Building base-compat-0.9.1... Configuring bytestring-lexing-0.5.0.2... Installed byteable-0.1.1 Building bytestring-lexing-0.5.0.2... Configuring cereal-0.5.4.0... Installed base-compat-0.9.1 Building cereal-0.5.4.0... Configuring cmdargs-0.10.14... Installed bytestring-lexing-0.5.0.2 Building cmdargs-0.10.14... Configuring colour-2.3.3... Installed cereal-0.5.4.0 Building colour-2.3.3... Configuring data-default-class-0.1.2.0... Installed colour-2.3.3 Building data-default-class-0.1.2.0... Configuring dlist-0.8.0.2... Installed data-default-class-0.1.2.0 Building dlist-0.8.0.2... Configuring erf-2.0.0.0... Installed dlist-0.8.0.2 Building erf-2.0.0.0... Configuring hourglass-0.2.10... Installed erf-2.0.0.0 Building hourglass-0.2.10... Configuring memory-0.13... Installed cmdargs-0.10.14 Building memory-0.13... Configuring mtl-2.2.1... Installed hourglass-0.2.10 Building mtl-2.2.1... Configuring network-2.6.3.1... Installed memory-0.13 Building network-2.6.3.1... Configuring old-locale-1.0.0.7... Installed mtl-2.2.1 Building old-locale-1.0.0.7... Configuring parallel-3.2.1.0... Installed old-locale-1.0.0.7 Building parallel-3.2.1.0... Configuring primitive-0.6.1.0... Installed parallel-3.2.1.0 Building primitive-0.6.1.0... Configuring random-1.1... Installed network-2.6.3.1 Building random-1.1... Configuring split-0.2.3.1... Installed primitive-0.6.1.0 Building split-0.2.3.1... Configuring stm-2.4.4.1... Installed random-1.1 Building stm-2.4.4.1... Configuring text-1.2.2.1... Installed split-0.2.3.1 Building text-1.2.2.1... Configuring time-locale-compat-0.1.1.3... Installed stm-2.4.4.1 Building time-locale-compat-0.1.1.3... Configuring transformers-compat-0.5.1.4... Installed time-locale-compat-0.1.1.3 Building transformers-compat-0.5.1.4... Configuring unix-compat-0.4.2.0... Installed transformers-compat-0.5.1.4 Building unix-compat-0.4.2.0... Configuring utf8-string-1.0.1.1... Installed unix-compat-0.4.2.0 Building utf8-string-1.0.1.1... Configuring word8-0.1.2... Installed utf8-string-1.0.1.1 Building word8-0.1.2... Configuring zlib-0.6.1.2... Installed word8-0.1.2 Building zlib-0.6.1.2... Installed text-1.2.2.1 Configuring asn1-types-0.3.2... Building asn1-types-0.3.2... Configuring palette-0.1.0.4... Installed asn1-types-0.3.2 Configuring pem-0.2.2... Installed zlib-0.6.1.2 Building palette-0.1.0.4... Building pem-0.2.2... Configuring socks-0.5.5... Installed pem-0.2.2 Building socks-0.5.5... Configuring cryptonite-0.20... Installed palette-0.1.0.4 Building cryptonite-0.20... Configuring abstract-deque-0.3... Installed socks-0.5.5 Building abstract-deque-0.3... Configuring monad-par-extras-0.3.3... Installed abstract-deque-0.3 Building monad-par-extras-0.3.3... Configuring async-2.1.1... Installed monad-par-extras-0.3.3 Building async-2.1.1... Configuring vector-0.11.0.0... Installed async-2.1.1 Building vector-0.11.0.0... Configuring mmorph-1.0.9... Installed cryptonite-0.20 Building mmorph-1.0.9... Configuring tagged-0.8.5... Installed vector-0.11.0.0 Building tagged-0.8.5... Configuring transformers-base-0.4.4... Installed mmorph-1.0.9 Building transformers-base-0.4.4... Configuring exceptions-0.8.3... Installed transformers-base-0.4.4 Building exceptions-0.8.3... Configuring blaze-builder-0.4.0.2... Installed tagged-0.8.5 Building blaze-builder-0.4.0.2... Configuring double-conversion-2.0.1.0... Installed exceptions-0.8.3 Configuring hashable-1.2.4.0... Installed blaze-builder-0.4.0.2 Building double-conversion-2.0.1.0... Building hashable-1.2.4.0... Configuring mime-types-0.1.0.7... Installed hashable-1.2.4.0 Building mime-types-0.1.0.7... Configuring hexpat-0.20.9... Installed double-conversion-2.0.1.0 Building hexpat-0.20.9... Configuring system-filepath-0.4.13.4... Installed mime-types-0.1.0.7 Building system-filepath-0.4.13.4... Configuring parsec-3.1.11... Installed hexpat-0.20.9 Building parsec-3.1.11... Installed system-filepath-0.4.13.4 Configuring asn1-encoding-0.9.4... Building asn1-encoding-0.9.4... Installed asn1-encoding-0.9.4 Configuring mwc-random-0.13.4.0... Building mwc-random-0.13.4.0... Configuring matrices-0.4.3... Installed parsec-3.1.11 Building matrices-0.4.3... Configuring vector-binary-instances-0.2.3.3... Installed mwc-random-0.13.4.0 Configuring vector-th-unbox-0.2.1.6... Installed matrices-0.4.3 Building vector-binary-instances-0.2.3.3... Building vector-th-unbox-0.2.1.6... Configuring monad-control-1.0.1.0... Installed vector-binary-instances-0.2.3.3 Building monad-control-1.0.1.0... Configuring vector-algorithms-0.7.0.1... Installed vector-th-unbox-0.2.1.6 Building vector-algorithms-0.7.0.1... Configuring cookie-0.4.2.1... Installed monad-control-1.0.1.0 Building cookie-0.4.2.1... Configuring case-insensitive-1.2.0.7... Installed cookie-0.4.2.1 Building case-insensitive-1.2.0.7... Configuring streaming-commons-0.1.16... Installed case-insensitive-1.2.0.7 Building streaming-commons-0.1.16... Configuring constraints-0.8... Installed vector-algorithms-0.7.0.1 Building constraints-0.8... Configuring scientific-0.3.4.9... Installed streaming-commons-0.1.16 Configuring unordered-containers-0.2.7.1... Installed constraints-0.8 Building scientific-0.3.4.9... Building unordered-containers-0.2.7.1... Configuring stringable-0.1.3... Installed scientific-0.3.4.9 Building stringable-0.1.3... Configuring system-fileio-0.3.16.3... Installed stringable-0.1.3 Building system-fileio-0.3.16.3... Installed unordered-containers-0.2.7.1 Configuring asn1-parse-0.9.4... Building asn1-parse-0.9.4... Installed system-fileio-0.3.16.3 Configuring network-uri-2.6.1.0... Installed asn1-parse-0.9.4 Configuring monad-par-0.3.4.8... Building network-uri-2.6.1.0... Building monad-par-0.3.4.8... Configuring math-functions-0.2.0.2... Installed network-uri-2.6.1.0 Building math-functions-0.2.0.2... Configuring http-types-0.9.1... Installed monad-par-0.3.4.8 Building http-types-0.9.1... Configuring lifted-base-0.2.3.8... Installed http-types-0.9.1 Building lifted-base-0.2.3.8... Configuring attoparsec-0.13.1.0... Installed lifted-base-0.2.3.8 Building attoparsec-0.13.1.0... Configuring biocore-0.3.1... Installed math-functions-0.2.0.2 Building biocore-0.3.1... Installed biocore-0.3.1 Configuring clustering-0.3.1... Installed attoparsec-0.13.1.0 Configuring x509-1.6.4... Building clustering-0.3.1... Building x509-1.6.4... Installed clustering-0.3.1 Configuring enclosed-exceptions-1.0.2... Building enclosed-exceptions-1.0.2... Configuring http-client-0.5.4... Installed x509-1.6.4 Configuring resourcet-1.1.8.1... Installed enclosed-exceptions-1.0.2 Building http-client-0.5.4... Building resourcet-1.1.8.1... Configuring lifted-async-0.9.0... Installed resourcet-1.1.8.1 Building lifted-async-0.9.0... Configuring seqloc-0.6.1.1... Installed lifted-async-0.9.0 Building seqloc-0.6.1.1... Configuring aeson-1.0.2.1... Installed http-client-0.5.4 Building aeson-1.0.2.1... Installed seqloc-0.6.1.1 Configuring x509-store-1.6.2... Building x509-store-1.6.2... Installed x509-store-1.6.2 Configuring conduit-1.2.8... Building conduit-1.2.8... Configuring shelly-1.6.8.1... Installed conduit-1.2.8 Building shelly-1.6.8.1... Failed to install shelly-1.6.8.1 Build log ( /home/builder/.cabal/logs/shelly-1.6.8.1.log ): cabal: Entering directory '/tmp/cabal-tmp-26301/shelly-1.6.8.1' Configuring shelly-1.6.8.1... Building shelly-1.6.8.1... Preprocessing library shelly-1.6.8.1... [1 of 6] Compiling Shelly.Base ( src/Shelly/Base.hs, dist/build/Shelly/Base.o ) src/Shelly/Base.hs:39:1: warning: [-Wunused-imports] The import of ‘ProcessHandle’ from module ‘System.Process’ is redundant src/Shelly/Base.hs:42:1: warning: [-Wunused-imports] The import of ‘liftM’ from module ‘Control.Monad’ is redundant [2 of 6] Compiling Shelly.Find ( src/Shelly/Find.hs, dist/build/Shelly/Find.o ) src/Shelly/Find.hs:67:5: warning: [-Wname-shadowing] This binding for ‘traverse’ shadows the existing binding imported from ‘Prelude’ at src/Shelly/Find.hs:11:1-32 (and originally defined in ‘Data.Traversable’) [3 of 6] Compiling Shelly ( src/Shelly.hs, dist/build/Shelly.o ) src/Shelly.hs:129:1: warning: [-Wunused-imports] The import of ‘Monoid’ from module ‘Data.Monoid’ is redundant src/Shelly.hs:321:13: warning: [-Wunused-matches] Defined but not used: ‘fp’ src/Shelly.hs:376:5: warning: [-Wincomplete-patterns] Pattern match(es) are non-exhaustive In an equation for ‘toHandle’: Patterns not matched: (Just NoStream) [4 of 6] Compiling Shelly.Lifted ( src/Shelly/Lifted.hs, dist/build/Shelly/Lifted.o ) src/Shelly/Lifted.hs:104:1: warning: [-Wunused-imports] The import of ‘Data.Monoid’ is redundant except perhaps to import instances from ‘Data.Monoid’ To import instances alone, use: import Data.Monoid() src/Shelly/Lifted.hs:117:1: warning: [-Wdeprecations] Module ‘Control.Monad.Trans.Error’ is deprecated: Use Control.Monad.Trans.Except instead src/Shelly/Lifted.hs:142:11: warning: [-Wdeprecations] In the use of type constructor or class ‘Error’ (imported from Control.Monad.Trans.Error): Deprecated: "Use Control.Monad.Trans.Except instead" src/Shelly/Lifted.hs:142:43: warning: [-Wdeprecations] In the use of type constructor or class ‘ErrorT’ (imported from Control.Monad.Trans.Error): Deprecated: "Use Control.Monad.Trans.Except instead" src/Shelly/Lifted.hs:143:16: warning: [-Wdeprecations] In the use of data constructor ‘ErrorT’ (imported from Control.Monad.Trans.Error): Deprecated: "Use Control.Monad.Trans.Except instead" src/Shelly/Lifted.hs:242:29: warning: [-Wdeprecations] In the use of type constructor or class ‘Error’ (imported from Control.Monad.Trans.Error): Deprecated: "Use Control.Monad.Trans.Except instead" src/Shelly/Lifted.hs:243:29: warning: [-Wdeprecations] In the use of type constructor or class ‘ErrorT’ (imported from Control.Monad.Trans.Error): Deprecated: "Use Control.Monad.Trans.Except instead" src/Shelly/Lifted.hs:244:18: warning: [-Wdeprecations] In the use of type constructor or class ‘ErrorT’ (imported from Control.Monad.Trans.Error): Deprecated: "Use Control.Monad.Trans.Except instead" src/Shelly/Lifted.hs:246:9: warning: [-Wdeprecations] In the use of data constructor ‘ErrorT’ (imported from Control.Monad.Trans.Error): Deprecated: "Use Control.Monad.Trans.Except instead" src/Shelly/Lifted.hs:247:41: warning: [-Wdeprecations] In the use of ‘runErrorT’ (imported from Control.Monad.Trans.Error): Deprecated: "Use Control.Monad.Trans.Except instead" src/Shelly/Lifted.hs:248:31: warning: [-Wdeprecations] In the use of data constructor ‘ErrorT’ (imported from Control.Monad.Trans.Error): Deprecated: "Use Control.Monad.Trans.Except instead" [5 of 6] Compiling Shelly.Pipe ( src/Shelly/Pipe.hs, dist/build/Shelly/Pipe.o ) src/Shelly/Pipe.hs:122:1: error: • The default type ‘Text’ is not an instance of ‘Num’ • When checking the types in a default declaration cabal: Leaving directory '/tmp/cabal-tmp-26301/shelly-1.6.8.1' Configuring samtools-0.2.4.3... Building samtools-0.2.4.3... Installed aeson-1.0.2.1 Configuring x509-system-1.6.4... Building x509-system-1.6.4... Configuring x509-validation-1.6.5... Installed x509-system-1.6.4 Building x509-validation-1.6.5... Configuring bbi-0.1.0... Installed x509-validation-1.6.5 Building bbi-0.1.0... Installed samtools-0.2.4.3 Configuring conduit-extra-1.1.15... Building conduit-extra-1.1.15... Installed bbi-0.1.0 Configuring aeson-pretty-0.8.2... Building aeson-pretty-0.8.2... Configuring statistics-0.13.3.0... Installed aeson-pretty-0.8.2 Building statistics-0.13.3.0... Configuring tls-1.3.8... Installed conduit-extra-1.1.15 Building tls-1.3.8... Installed tls-1.3.8 Configuring connection-0.2.6... Building connection-0.2.6... Installed statistics-0.13.3.0 Installed connection-0.2.6 Configuring http-client-tls-0.3.3... Building http-client-tls-0.3.3... Installed http-client-tls-0.3.3 Configuring http-conduit-2.2.3... Building http-conduit-2.2.3... Installed http-conduit-2.2.3 cabal: Error: some packages failed to install: bioinformatics-toolkit-0.1.0 depends on shelly-1.6.8.1 which failed to install. shelly-1.6.8.1 failed during the building phase. The exception was: ExitFailure 1