Resolving dependencies... Configuring IntervalMap-0.5.2.0... Configuring List-0.5.2... Building IntervalMap-0.5.2.0... Building List-0.5.2... Installed List-0.5.2 Configuring abstract-par-0.3.3... Building abstract-par-0.3.3... Configuring ansi-terminal-0.6.2.3... Installed abstract-par-0.3.3 Building ansi-terminal-0.6.2.3... Configuring base16-bytestring-0.1.1.6... Installed IntervalMap-0.5.2.0 Building base16-bytestring-0.1.1.6... Configuring base64-bytestring-1.0.0.1... Installed ansi-terminal-0.6.2.3 Building base64-bytestring-1.0.0.1... Configuring byteable-0.1.1... Installed base16-bytestring-0.1.1.6 Building byteable-0.1.1... Configuring base-compat-0.9.1... Installed byteable-0.1.1 Configuring bytestring-lexing-0.5.0.2... Installed base64-bytestring-1.0.0.1 Building base-compat-0.9.1... Building bytestring-lexing-0.5.0.2... Configuring cereal-0.5.4.0... Installed base-compat-0.9.1 Building cereal-0.5.4.0... Configuring colour-2.3.3... Installed bytestring-lexing-0.5.0.2 Building colour-2.3.3... Configuring cmdargs-0.10.14... Installed cereal-0.5.4.0 Building cmdargs-0.10.14... Configuring data-default-class-0.1.2.0... Installed colour-2.3.3 Building data-default-class-0.1.2.0... Configuring erf-2.0.0.0... Installed data-default-class-0.1.2.0 Building erf-2.0.0.0... Configuring dlist-0.8.0.2... Installed erf-2.0.0.0 Building dlist-0.8.0.2... Configuring hourglass-0.2.10... Installed dlist-0.8.0.2 Building hourglass-0.2.10... Configuring mtl-2.2.1... Installed hourglass-0.2.10 Building mtl-2.2.1... Configuring network-2.6.3.1... Installed cmdargs-0.10.14 Configuring memory-0.13... Installed mtl-2.2.1 Building memory-0.13... Building network-2.6.3.1... Configuring parallel-3.2.1.0... Installed memory-0.13 Building parallel-3.2.1.0... Configuring primitive-0.6.1.0... Installed network-2.6.3.1 Building primitive-0.6.1.0... Configuring old-locale-1.0.0.7... Installed parallel-3.2.1.0 Building old-locale-1.0.0.7... Configuring random-1.1... Installed old-locale-1.0.0.7 Building random-1.1... Configuring semigroups-0.18.2... Installed primitive-0.6.1.0 Building semigroups-0.18.2... Configuring split-0.2.3.1... Installed semigroups-0.18.2 Configuring stm-2.4.4.1... Installed random-1.1 Building split-0.2.3.1... Building stm-2.4.4.1... Configuring time-locale-compat-0.1.1.3... Installed split-0.2.3.1 Building time-locale-compat-0.1.1.3... Configuring transformers-compat-0.5.1.4... Installed stm-2.4.4.1 Configuring text-1.2.2.1... Installed time-locale-compat-0.1.1.3 Building transformers-compat-0.5.1.4... Building text-1.2.2.1... Configuring utf8-string-1.0.1.1... Installed transformers-compat-0.5.1.4 Building utf8-string-1.0.1.1... Configuring word8-0.1.2... Installed utf8-string-1.0.1.1 Building word8-0.1.2... Configuring unix-compat-0.4.2.0... Installed word8-0.1.2 Building unix-compat-0.4.2.0... Configuring zlib-0.6.1.2... Installed unix-compat-0.4.2.0 Building zlib-0.6.1.2... Installed text-1.2.2.1 Configuring ansi-wl-pprint-0.6.7.3... Installed zlib-0.6.1.2 Configuring palette-0.1.0.4... Building ansi-wl-pprint-0.6.7.3... Building palette-0.1.0.4... Configuring pem-0.2.2... Installed ansi-wl-pprint-0.6.7.3 Building pem-0.2.2... Configuring asn1-types-0.3.2... Installed pem-0.2.2 Configuring cryptonite-0.20... Installed palette-0.1.0.4 Building asn1-types-0.3.2... Building cryptonite-0.20... Configuring socks-0.5.5... Installed asn1-types-0.3.2 Building socks-0.5.5... Configuring vector-0.11.0.0... Installed socks-0.5.5 Building vector-0.11.0.0... Configuring abstract-deque-0.3... Installed vector-0.11.0.0 Building abstract-deque-0.3... Configuring monad-par-extras-0.3.3... Installed cryptonite-0.20 Building monad-par-extras-0.3.3... Configuring async-2.1.1... Installed abstract-deque-0.3 Building async-2.1.1... Configuring exceptions-0.8.3... Installed monad-par-extras-0.3.3 Building exceptions-0.8.3... Configuring mmorph-1.0.9... Installed async-2.1.1 Building mmorph-1.0.9... Configuring tagged-0.8.5... Installed exceptions-0.8.3 Configuring transformers-base-0.4.4... Installed mmorph-1.0.9 Building tagged-0.8.5... Building transformers-base-0.4.4... Configuring blaze-builder-0.4.0.2... Installed transformers-base-0.4.4 Building blaze-builder-0.4.0.2... Configuring double-conversion-2.0.1.0... Installed tagged-0.8.5 Building double-conversion-2.0.1.0... Configuring hashable-1.2.4.0... Installed blaze-builder-0.4.0.2 Building hashable-1.2.4.0... Configuring hexpat-0.20.9... Installed double-conversion-2.0.1.0 Building hexpat-0.20.9... Configuring mime-types-0.1.0.7... Installed hashable-1.2.4.0 Building mime-types-0.1.0.7... Configuring parsec-3.1.11... Installed mime-types-0.1.0.7 Building parsec-3.1.11... Configuring system-filepath-0.4.13.4... Installed hexpat-0.20.9 Building system-filepath-0.4.13.4... Installed parsec-3.1.11 Configuring asn1-encoding-0.9.4... Building asn1-encoding-0.9.4... Configuring optparse-applicative-0.13.0.0... Installed system-filepath-0.4.13.4 Building optparse-applicative-0.13.0.0... Configuring chunked-data-0.3.0... Installed asn1-encoding-0.9.4 Building chunked-data-0.3.0... Configuring matrices-0.4.3... Installed chunked-data-0.3.0 Building matrices-0.4.3... Configuring mwc-random-0.13.4.0... Installed optparse-applicative-0.13.0.0 Building mwc-random-0.13.4.0... Configuring vector-algorithms-0.7.0.1... Installed matrices-0.4.3 Building vector-algorithms-0.7.0.1... Configuring vector-binary-instances-0.2.3.3... Installed mwc-random-0.13.4.0 Building vector-binary-instances-0.2.3.3... Configuring vector-th-unbox-0.2.1.6... Installed vector-binary-instances-0.2.3.3 Building vector-th-unbox-0.2.1.6... Configuring monad-control-1.0.1.0... Installed vector-th-unbox-0.2.1.6 Building monad-control-1.0.1.0... Configuring cookie-0.4.2.1... Installed vector-algorithms-0.7.0.1 Building cookie-0.4.2.1... Configuring streaming-commons-0.1.16... Installed monad-control-1.0.1.0 Building streaming-commons-0.1.16... Configuring case-insensitive-1.2.0.7... Installed cookie-0.4.2.1 Building case-insensitive-1.2.0.7... Configuring constraints-0.8... Installed case-insensitive-1.2.0.7 Building constraints-0.8... Configuring scientific-0.3.4.9... Installed streaming-commons-0.1.16 Building scientific-0.3.4.9... Configuring unordered-containers-0.2.7.1... Installed constraints-0.8 Building unordered-containers-0.2.7.1... Configuring void-0.7.1... Installed scientific-0.3.4.9 Building void-0.7.1... Configuring network-uri-2.6.1.0... Installed void-0.7.1 Building network-uri-2.6.1.0... Installed network-uri-2.6.1.0 Configuring stringable-0.1.3... Building stringable-0.1.3... Configuring asn1-parse-0.9.4... Installed unordered-containers-0.2.7.1 Building asn1-parse-0.9.4... Configuring monad-par-0.3.4.8... Installed stringable-0.1.3 Configuring system-fileio-0.3.16.3... Installed asn1-parse-0.9.4 Building monad-par-0.3.4.8... Building system-fileio-0.3.16.3... Configuring lifted-base-0.2.3.8... Installed system-fileio-0.3.16.3 Building lifted-base-0.2.3.8... Configuring math-functions-0.2.0.2... Installed monad-par-0.3.4.8 Building math-functions-0.2.0.2... Configuring http-types-0.9.1... Installed lifted-base-0.2.3.8 Building http-types-0.9.1... Configuring attoparsec-0.13.1.0... Installed http-types-0.9.1 Building attoparsec-0.13.1.0... Installed math-functions-0.2.0.2 Configuring clustering-0.3.1... Building clustering-0.3.1... Configuring biocore-0.3.1... Installed attoparsec-0.13.1.0 Building biocore-0.3.1... Configuring x509-1.6.4... Installed biocore-0.3.1 Building x509-1.6.4... Configuring enclosed-exceptions-1.0.2... Installed clustering-0.3.1 Building enclosed-exceptions-1.0.2... Configuring mono-traversable-1.0.1... Installed enclosed-exceptions-1.0.2 Building mono-traversable-1.0.1... Configuring lifted-async-0.9.0... Installed x509-1.6.4 Building lifted-async-0.9.0... Configuring resourcet-1.1.8.1... Installed lifted-async-0.9.0 Building resourcet-1.1.8.1... Configuring http-client-0.5.4... Installed resourcet-1.1.8.1 Building http-client-0.5.4... Installed mono-traversable-1.0.1 Configuring seqloc-0.6.1.1... Building seqloc-0.6.1.1... Configuring aeson-1.0.2.1... Installed seqloc-0.6.1.1 Building aeson-1.0.2.1... Configuring x509-store-1.6.2... Installed http-client-0.5.4 Building x509-store-1.6.2... Configuring shelly-1.6.8.1... Installed x509-store-1.6.2 Building shelly-1.6.8.1... Configuring conduit-1.2.8... Failed to install shelly-1.6.8.1 Build log ( /home/builder/.cabal/logs/shelly-1.6.8.1.log ): cabal: Entering directory '/tmp/cabal-tmp-1741/shelly-1.6.8.1' Configuring shelly-1.6.8.1... Building shelly-1.6.8.1... Preprocessing library shelly-1.6.8.1... [1 of 6] Compiling Shelly.Base ( src/Shelly/Base.hs, dist/build/Shelly/Base.o ) src/Shelly/Base.hs:39:1: warning: [-Wunused-imports] The import of ‘ProcessHandle’ from module ‘System.Process’ is redundant src/Shelly/Base.hs:42:1: warning: [-Wunused-imports] The import of ‘liftM’ from module ‘Control.Monad’ is redundant [2 of 6] Compiling Shelly.Find ( src/Shelly/Find.hs, dist/build/Shelly/Find.o ) src/Shelly/Find.hs:67:5: warning: [-Wname-shadowing] This binding for ‘traverse’ shadows the existing binding imported from ‘Prelude’ at src/Shelly/Find.hs:11:1-32 (and originally defined in ‘Data.Traversable’) [3 of 6] Compiling Shelly ( src/Shelly.hs, dist/build/Shelly.o ) src/Shelly.hs:129:1: warning: [-Wunused-imports] The import of ‘Monoid’ from module ‘Data.Monoid’ is redundant src/Shelly.hs:321:13: warning: [-Wunused-matches] Defined but not used: ‘fp’ src/Shelly.hs:376:5: warning: [-Wincomplete-patterns] Pattern match(es) are non-exhaustive In an equation for ‘toHandle’: Patterns not matched: (Just NoStream) [4 of 6] Compiling Shelly.Lifted ( src/Shelly/Lifted.hs, dist/build/Shelly/Lifted.o ) src/Shelly/Lifted.hs:104:1: warning: [-Wunused-imports] The import of ‘Data.Monoid’ is redundant except perhaps to import instances from ‘Data.Monoid’ To import instances alone, use: import Data.Monoid() src/Shelly/Lifted.hs:117:1: warning: [-Wdeprecations] Module ‘Control.Monad.Trans.Error’ is deprecated: Use Control.Monad.Trans.Except instead src/Shelly/Lifted.hs:142:11: warning: [-Wdeprecations] In the use of type constructor or class ‘Error’ (imported from Control.Monad.Trans.Error): Deprecated: "Use Control.Monad.Trans.Except instead" src/Shelly/Lifted.hs:142:43: warning: [-Wdeprecations] In the use of type constructor or class ‘ErrorT’ (imported from Control.Monad.Trans.Error): Deprecated: "Use Control.Monad.Trans.Except instead" src/Shelly/Lifted.hs:143:16: warning: [-Wdeprecations] In the use of data constructor ‘ErrorT’ (imported from Control.Monad.Trans.Error): Deprecated: "Use Control.Monad.Trans.Except instead" src/Shelly/Lifted.hs:242:29: warning: [-Wdeprecations] In the use of type constructor or class ‘Error’ (imported from Control.Monad.Trans.Error): Deprecated: "Use Control.Monad.Trans.Except instead" src/Shelly/Lifted.hs:243:29: warning: [-Wdeprecations] In the use of type constructor or class ‘ErrorT’ (imported from Control.Monad.Trans.Error): Deprecated: "Use Control.Monad.Trans.Except instead" src/Shelly/Lifted.hs:244:18: warning: [-Wdeprecations] In the use of type constructor or class ‘ErrorT’ (imported from Control.Monad.Trans.Error): Deprecated: "Use Control.Monad.Trans.Except instead" src/Shelly/Lifted.hs:246:9: warning: [-Wdeprecations] In the use of data constructor ‘ErrorT’ (imported from Control.Monad.Trans.Error): Deprecated: "Use Control.Monad.Trans.Except instead" src/Shelly/Lifted.hs:247:41: warning: [-Wdeprecations] In the use of ‘runErrorT’ (imported from Control.Monad.Trans.Error): Deprecated: "Use Control.Monad.Trans.Except instead" src/Shelly/Lifted.hs:248:31: warning: [-Wdeprecations] In the use of data constructor ‘ErrorT’ (imported from Control.Monad.Trans.Error): Deprecated: "Use Control.Monad.Trans.Except instead" [5 of 6] Compiling Shelly.Pipe ( src/Shelly/Pipe.hs, dist/build/Shelly/Pipe.o ) src/Shelly/Pipe.hs:122:1: error: • The default type ‘Text’ is not an instance of ‘Num’ • When checking the types in a default declaration cabal: Leaving directory '/tmp/cabal-tmp-1741/shelly-1.6.8.1' Building conduit-1.2.8... Installed conduit-1.2.8 Configuring x509-system-1.6.4... Building x509-system-1.6.4... Configuring x509-validation-1.6.5... Installed x509-system-1.6.4 Building x509-validation-1.6.5... Configuring samtools-0.2.4.3... Installed aeson-1.0.2.1 Building samtools-0.2.4.3... Configuring conduit-extra-1.1.15... Installed x509-validation-1.6.5 Building conduit-extra-1.1.15... Installed conduit-extra-1.1.15 Configuring aeson-pretty-0.8.2... Building aeson-pretty-0.8.2... Configuring statistics-0.13.3.0... Installed samtools-0.2.4.3 Building statistics-0.13.3.0... Configuring conduit-combinators-1.0.8.2... Installed aeson-pretty-0.8.2 Building conduit-combinators-1.0.8.2... Configuring tls-1.3.8... Installed conduit-combinators-1.0.8.2 Building tls-1.3.8... Installed statistics-0.13.3.0 Installed tls-1.3.8 Configuring connection-0.2.6... Building connection-0.2.6... Installed connection-0.2.6 Configuring http-client-tls-0.3.3... Building http-client-tls-0.3.3... Installed http-client-tls-0.3.3 Configuring http-conduit-2.2.3... Building http-conduit-2.2.3... Installed http-conduit-2.2.3 cabal: Error: some packages failed to install: bioinformatics-toolkit-0.2.1 depends on shelly-1.6.8.1 which failed to install. shelly-1.6.8.1 failed during the building phase. The exception was: ExitFailure 1