Bio.GO.Parser

Documentation

readOWL :: FilePath -> IO [GO]

readOWLAsMap :: FilePath -> IO GOMap

data GAF

Constructors

GAF

Fields

• gafDb :: ByteString
• gafDbId :: ByteString
• gafSymbol :: CI ByteString
• gafQualifier :: Maybe [ByteString]
• gafGoId :: GOId
• gafDbRef :: [ByteString]
• gafEvidenceCode :: ByteString
• gafWithOrFrom :: Maybe [ByteString]
• gafAspect :: ByteString
• gafName :: Maybe ByteString
• gafSynonym :: Maybe [ByteString]
• gafType :: ByteString
• gafTaxon :: [ByteString]
• gafDate :: ByteString
• gafAssignedBy :: ByteString
• gafAnnotationExtension :: Maybe [ByteString]
• gafGeneProductID :: Maybe ByteString

Instances

Eq GAF

Methods

(==) :: GAF -> GAF -> Bool

(/=) :: GAF -> GAF -> Bool

Ord GAF

Methods

compare :: GAF -> GAF -> Ordering

(<) :: GAF -> GAF -> Bool

(<=) :: GAF -> GAF -> Bool

(>) :: GAF -> GAF -> Bool

(>=) :: GAF -> GAF -> Bool

max :: GAF -> GAF -> GAF

min :: GAF -> GAF -> GAF

Show GAF

Methods

showsPrec :: Int -> GAF -> ShowS

show :: GAF -> String

showList :: [GAF] -> ShowS

readGAF :: FilePath -> Source (ResourceT IO) GAF

GO Annotation File (GAF) Format 2.1 Parser. For details read: http://geneontology.org/page/go-annotation-file-gaf-format-21.